View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_7 (Length: 240)
Name: NF10735_low_7
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 17232319 - 17232097
Alignment:
| Q |
18 |
ccaccgagcccgaaaaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtc |
117 |
Q |
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| T |
17232319 |
ccactgaggccgaaaaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtc |
17232220 |
T |
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| Q |
118 |
tgttctatgagtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgt |
217 |
Q |
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| T |
17232219 |
tgttctatgagtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacatgaacacgt |
17232120 |
T |
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| Q |
218 |
caaatagtataaccaccatgtgc |
240 |
Q |
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| T |
17232119 |
caaatagtataaccaccatgtgc |
17232097 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 1251061 - 1250998
Alignment:
| Q |
176 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtg |
239 |
Q |
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| T |
1251061 |
tattcataagtaaaaaaagtcataccacatacatgaacaattcaaatagtataaccaccatgtg |
1250998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 38946403 - 38946495
Alignment:
| Q |
137 |
gtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataa |
229 |
Q |
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| T |
38946403 |
gtattatacttcatttgagataagttgaaatcgcatacctattcaaaagtaaaaaaagtcataccatatacatgaacagttcaaatagtataa |
38946495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 38946301 - 38946348
Alignment:
| Q |
40 |
aacatgaacattcaatcaggaggatataaaaaatgaattgattaataa |
87 |
Q |
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| T |
38946301 |
aacatgaacattcaataaggatgatataaagaatgaattgattgataa |
38946348 |
T |
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