View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_9 (Length: 210)
Name: NF10735_low_9
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 36621948 - 36622127
Alignment:
| Q |
15 |
agacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgcatgcaaaacgaagccgtctg |
114 |
Q |
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| T |
36621948 |
agacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaac----catgtaaaacgaagccgtctg |
36622043 |
T |
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| Q |
115 |
gaaatttaactccattattgaaactgcatgtttataaatccatgcaattacaacttgcacacgtgtgggagaaggcatggaact |
198 |
Q |
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| T |
36622044 |
gaaatttaaccccattattgatacagcatgcttgtaaatccatgcaattacaacttgcacgcgtgtgggagaaggcatggaact |
36622127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 36632755 - 36632924
Alignment:
| Q |
25 |
caaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgcatgcaaaacgaagccgtctggaaatttaac |
124 |
Q |
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| T |
36632755 |
caaactatgttccctgcacatttttccgacaatggaggatccattctttttctaagatttacagccatg----caaaacgacgccgtttggaaatttaac |
36632850 |
T |
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| Q |
125 |
tccattattgaaactgcatgtttataaatccatgcaattacaacttgcacacgtgtgggagaaggcatggaact |
198 |
Q |
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| T |
36632851 |
cccattattgaaactgtatgcttgtaaatccatgcagttacaacttgtacatgtgtgggagaatgcatgaaact |
36632924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 36627173 - 36627352
Alignment:
| Q |
15 |
agacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgcatgcaaaacgaagccgtctg |
114 |
Q |
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| T |
36627173 |
agacgaaaaccaaaatatgttccctacacaatgttcagacaatggaggaaccattcttctacgaagatcgacaatcatgct----aaacattgccgtctg |
36627268 |
T |
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| Q |
115 |
gaaatttaactccattattgaaactgcatgtttataaatccatgcaattacaacttgcacacgtgtgggagaaggcatggaact |
198 |
Q |
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| T |
36627269 |
gaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtacttgcgtgggagaatgcatggaact |
36627352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 34320886 - 34320726
Alignment:
| Q |
15 |
agacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgcatgcaaaacgaagccgtctg |
114 |
Q |
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|||||| ||||||| ||||| |||||||| ||||||||||| | |||||||||||||||||| |||| ||| |||||| ||| |||||||||| |
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| T |
34320886 |
agacgagaaccaaacaatgtttcctacacacttttcagacaatgcaggaaccattcttttgcgaagatctacacccatgct----aaataaagccgtctg |
34320791 |
T |
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| Q |
115 |
gaaatttaactccattattgaaactgcatgtttataaatccatgcaattacaacttgcacacgtg |
179 |
Q |
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| T |
34320790 |
gaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtg |
34320726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 34329794 - 34329732
Alignment:
| Q |
15 |
agacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcg |
77 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329794 |
agacgagaaccaaaatatgttccctacacatttttcagacaacggaggaaccattcttttgcg |
34329732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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