View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_high_9 (Length: 241)
Name: NF10736_high_9
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28773175 - 28773397
Alignment:
| Q |
1 |
tttaaaactatttgacactgtaattgcctaccctttaattgcttttacaaaatatcttcaaaaattatatcataccgtggaatattcattgctaaaccta |
100 |
Q |
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| T |
28773175 |
tttaaaactatttgacactgtaattgcctaccctttaattgcttttacaaaatatcttcaaaaattatatcataccgtggaatattcattgctaaaccta |
28773274 |
T |
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| Q |
101 |
tcataactctggcttcttatacgtgtcttattgttgttgctcaagttaactaatgtctctccatcaaatttttccctttcttcaattgatagttggttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28773275 |
tcataactctggcttcttatacgtgtcttattgttgttgctcaagttaactaatgtctctccatcaaatttttccctttcttcaattgatagttggttat |
28773374 |
T |
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| Q |
201 |
agcatgtttctccaccctcctcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28773375 |
agcatgtttctccaccctcctcg |
28773397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 28765399 - 28765553
Alignment:
| Q |
60 |
aaaaattatatcataccgtggaatattcattgctaaacctatcataactctggcttcttatacgtgtcttattgttgttgctcaagttaactaatgtctc |
159 |
Q |
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|||||||||||||||||||||| | |||||||| || | |||| |||||||||||||||||| ||| |||| ||||| ||||||||||||||||||| |
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| T |
28765399 |
aaaaattatatcataccgtggagttttcattgccaatcttatcgtaactctggcttcttataattgttttatggttgtccgtcaagttaactaatgtctc |
28765498 |
T |
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| Q |
160 |
tccatcaaatttttccctttcttcaattgatagttggttatagcatgtttctcca |
214 |
Q |
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| T |
28765499 |
ttcatcaaattttgccctttcttcgtttgatagttggttatagcatttttctcca |
28765553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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