View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_low_14 (Length: 240)
Name: NF10736_low_14
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 28847189 - 28847413
Alignment:
| Q |
2 |
taaattttaattttaatcatatttggaaatatatgacctacaagaaattggctatcgataca-----ttgcctgctggcaacaaataacacaaaacacca |
96 |
Q |
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| T |
28847189 |
taaatcttaattttaatcatatttggaaatatatgacctacaagaaattggctatcgatacacctcattgcctgctggcaacaaataacacaa--cacca |
28847286 |
T |
|
| Q |
97 |
gccaaagtaaaccaatttctgcacatttgaactgctaatgttgtcactgaaatgatcgtacaaaagtaccactttgtcaaaaaacttcaaattagtcaac |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28847287 |
gccaaagtaaacgaatttctgcacatttgaactgctaatgttgtcactgaaatgatcgtacaaaagtaccactttgtcaaaaaacttcaaattagtcaac |
28847386 |
T |
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| Q |
197 |
aaaaataaagctaaggcaatttagttg |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28847387 |
aaaaataaagctaaggcaatttagttg |
28847413 |
T |
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