View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_low_2 (Length: 390)
Name: NF10736_low_2
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 49179281 - 49178911
Alignment:
| Q |
1 |
ataggaattgatttccggatcaggaagcctgctcctcatctacaattaaaataaaaatgaaactcaacctcaactcattatatatcaatatcatcaataa |
100 |
Q |
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| T |
49179281 |
ataggaattgatctccggatcaggaagcctgcttctcatctacaattaaaataaaaatgaaactcaacatcgactcattatatatcatca--ataaataa |
49179184 |
T |
|
| Q |
101 |
ttcattggtaacttaacttacagtgagtgctaaaaactcgacattgtgaattgctctaaacggaacctcgtctgcattgatttgaactctgataaacttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49179183 |
ttcattggtaacttaacttacagtgagtgctaaaaactcgacattgtgaattgctctaaacggaacctcgtctgcattgatttgaactctgatcaacttg |
49179084 |
T |
|
| Q |
201 |
ggtaagattttaaactctccagtggcggtggctttactaagagtaaaaacctcatcaggctcaggtgttggttctttatagtaaatgttagcaatcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49179083 |
ggtaagattttaaactctccagtggcggtggctttactaagagtaaaaacctcatcaggctcaggtgttggttctttatagtaaatgttagcaatcaaat |
49178984 |
T |
|
| Q |
301 |
cttccaaaacgagacatccatgtagaatcttgttgaaattcgtcttatttttcaaataaacgcgattcaaatg |
373 |
Q |
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| T |
49178983 |
cttccaaaacgggacatccatagagaatcttgttgaaattcgtcttatttttcaaataaacgcgatccaaatg |
49178911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 106 - 356
Target Start/End: Original strand, 49170945 - 49171195
Alignment:
| Q |
106 |
tggtaacttaacttacagtgagtgctaaaaactcgacattgtgaattgctctaaacggaacctcgtctgcattgatttgaactctgataaacttgggtaa |
205 |
Q |
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||||||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||| | ||||||||| |||| || ||||||| ||| |
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| T |
49170945 |
tggtaacgtaacttacagtgagtgataaaaattcgacattatgaattgctctaaacggaacatcgcatacattgattttggctctaatcaacttggataa |
49171044 |
T |
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| Q |
206 |
gattttaaactctccagtggcggtggctttactaagagtaaaaacctcatcaggctcaggtgttggttctttatagtaaatgttagcaatcaaatcttcc |
305 |
Q |
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||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
49171045 |
gattttaaactctcctgtggcagtggctgtactaagagtaaaaacctcctcaggctgaggtgctggttctatatagtaaatgttagcaatcaaatcttcc |
49171144 |
T |
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| Q |
306 |
aaaacgagacatccatgtagaatcttgttgaaattcgtcttatttttcaaa |
356 |
Q |
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|||| | |||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
49171145 |
aaaatgggacatccatgaagaagcttgttgaaattctgcttatttttcaaa |
49171195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 31246761 - 31246793
Alignment:
| Q |
277 |
tatagtaaatgttagcaatcaaatcttccaaaa |
309 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
31246761 |
tataataaatgttagcaatcaaatcttccaaaa |
31246793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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