View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10736_low_20 (Length: 224)

Name: NF10736_low_20
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10736_low_20
NF10736_low_20
[»] chr1 (3 HSPs)
chr1 (18-113)||(52325044-52325139)
chr1 (165-212)||(52324856-52324903)
chr1 (18-72)||(52329515-52329569)
[»] chr7 (1 HSPs)
chr7 (20-77)||(9179216-9179273)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 52325139 - 52325044
Alignment:
Q  18 tgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacatacatttacacacatgctactaactataattcattgct 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52325139 tgtacttcgaataaatttctcaaagggacctaaaaacacccataaataagtgagtatatacatttacacacatgctactaactataattcattgct 52325044  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 52324903 - 52324856
Alignment:
Q  165 atgattaggggcatatgatcattatggagtagtatgttgctacctttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52324903 atgattaggggcatatgatcattatggagtagtatgttgctacctttg 52324856  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 52329569 - 52329515
Alignment:
Q  18 tgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagt 72  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||    
T  52329569 tgtacatcgaataaacttctcaaagggacctaaacacacccataaataaatgagt 52329515  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 9179273 - 9179216
Alignment:
Q  20 tacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacata 77  Q
    ||||||||||||||||||||||| |||||||| || |||| | ||| |||||||||||    
T  9179273 tacttcgaataaatttctcaaagagacctaaacactcccatagatacgtgagtacata 9179216  T

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