View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_low_23 (Length: 218)
Name: NF10736_low_23
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12812080 - 12812280
Alignment:
| Q |
1 |
tttacaattgcctagctaaaagactattgaatacaacaagctcacagcttttcacttgccatttgtttataatgtgcaaattatggacaatgatcaataa |
100 |
Q |
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| T |
12812080 |
tttacaattgcctagctaaaagactattgaatacaacaagctcacagcttttcacttgccatttgtttataatttgcaaattatggacaatgatcaataa |
12812179 |
T |
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| Q |
101 |
aagaaaaatcatgagagccaaacaagacatagatatcaatacaatatatacaccaaataagacaaacccacaattattactaaacaacctatgtcaaagt |
200 |
Q |
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| T |
12812180 |
aagaaaaatcatgaaagccaaacaagacatagatatcaatacaatatatacatcaaataagacaaacccaaaattattactaaacaacctctgtcaaagt |
12812279 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
12812280 |
t |
12812280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 12837936 - 12838036
Alignment:
| Q |
78 |
aaattatggacaatgatcaataaaagaaaa---atcatgagagccaaacaagacatagatatcaatacaatatatacaccaaataagacaaacccacaat |
174 |
Q |
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| T |
12837936 |
aaattatggacaatgatcaacataagaaaaaaaatcatgacagccataaaagacatatatatcaatactatatatacacaaaataagacaaatccaaaat |
12838035 |
T |
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| Q |
175 |
t |
175 |
Q |
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| T |
12838036 |
t |
12838036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 12830903 - 12830992
Alignment:
| Q |
1 |
tttacaattgcctagcta-aaagactattgaatacaacaagctcacagcttttcacttgccatttgtttataatgtgcaaattatggacaat |
91 |
Q |
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| T |
12830903 |
tttacaattgcttagctacaaaaactatt--atacaacaagctcgtagctttttactgcccatttgtttataatgtacaaattatggacaat |
12830992 |
T |
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