View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_low_3 (Length: 333)
Name: NF10736_low_3
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 28845725 - 28845422
Alignment:
| Q |
1 |
tgtgaattgaccttttggttaataattcattctagagaaggagtctttcaatagcacag---attcctaactcctgttcaataaatattggtgctgtata |
97 |
Q |
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| T |
28845725 |
tgtgaattgaccttttggttaataattcattctagaaaaggagtctttcaatagcacacttcattcctaactcctgctcaataaatattggtgctgtata |
28845626 |
T |
|
| Q |
98 |
agaacggttaatatttgagcaaattgaaaatcataatattaagatccaaacgctgccttaagtcaaatcttctataaatgcttcaattgaccccacaact |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28845625 |
agaacggttaatacttgagcaaattgaaaatcataatattaagatccaaacgctgcctta--------------taaatgcttcaattgaccccacaact |
28845540 |
T |
|
| Q |
198 |
atgtatatgcgatgataatatcttctttctcacggaatgtgattgcctaactaaaaagataatattaattgagcaactaccaaaaagttgtgtggaggac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28845539 |
atgtatatgcgatgataatatcttctttctcacggaatgtgattgcctaactaaaaagataatattaattgagcaactaccaaaaagttgtgtggaggac |
28845440 |
T |
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| Q |
298 |
aataatgttatgtttgat |
315 |
Q |
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|||||||||||||||||| |
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| T |
28845439 |
aataatgttatgtttgat |
28845422 |
T |
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