View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10736_low_7 (Length: 278)

Name: NF10736_low_7
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10736_low_7
NF10736_low_7
[»] chr2 (10 HSPs)
chr2 (128-259)||(8174374-8174505)
chr2 (45-122)||(43805725-43805803)
chr2 (68-112)||(30392066-30392110)
chr2 (68-111)||(38997045-38997088)
chr2 (76-110)||(30391461-30391495)
chr2 (10-51)||(39738809-39738850)
chr2 (68-123)||(23175271-23175326)
chr2 (68-123)||(23586528-23586583)
chr2 (23-111)||(29720308-29720396)
chr2 (45-109)||(36779942-36780006)
[»] chr5 (3 HSPs)
chr5 (121-259)||(1122733-1122871)
chr5 (45-111)||(17219042-17219108)
chr5 (66-110)||(17219768-17219812)
[»] chr1 (5 HSPs)
chr1 (1-123)||(51308490-51308612)
chr1 (12-111)||(52668179-52668276)
chr1 (68-113)||(38599887-38599932)
chr1 (44-123)||(45817281-45817361)
chr1 (68-112)||(46315403-46315447)
[»] chr8 (10 HSPs)
chr8 (13-113)||(40317145-40317245)
chr8 (1-84)||(40317772-40317855)
chr8 (23-123)||(35020127-35020228)
chr8 (9-66)||(39862294-39862351)
chr8 (45-113)||(1274493-1274561)
chr8 (66-110)||(11112347-11112391)
chr8 (48-113)||(22475019-22475084)
chr8 (45-113)||(28930924-28930992)
chr8 (45-113)||(28931475-28931543)
chr8 (45-113)||(37810323-37810391)
[»] chr6 (7 HSPs)
chr6 (12-111)||(13355962-13356061)
chr6 (66-113)||(29200705-29200752)
chr6 (68-123)||(8172872-8172926)
chr6 (10-52)||(11434619-11434661)
chr6 (35-123)||(28295433-28295522)
chr6 (35-123)||(28516551-28516640)
chr6 (12-52)||(34243514-34243554)
[»] chr3 (6 HSPs)
chr3 (33-123)||(35650812-35650902)
chr3 (68-123)||(571696-571750)
chr3 (68-113)||(8351319-8351364)
chr3 (64-122)||(23709524-23709582)
chr3 (64-122)||(23727980-23728038)
chr3 (64-122)||(23746436-23746494)
[»] chr4 (3 HSPs)
chr4 (68-113)||(6114997-6115042)
chr4 (44-123)||(19330201-19330279)
chr4 (68-113)||(6115055-6115100)
[»] chr7 (1 HSPs)
chr7 (68-113)||(27819230-27819275)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 8174374 - 8174505
Alignment:
Q  128 tggacaagaacccgtggcccgccggaatccgcaataaccgagttaatttttgatcaaacgggcggttcgggtcggtcaatcgggtgagcagactgtcaga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8174374 tggacaagaacccgtggcccgccggaatccgcaataaccgagtcaatttttgatcaaacgggcggttcgggtcggtcaatcgggtgagccgactgtcaga 8174473  T
Q  228 atcggtttaacacggtttgaaacgggcaggtg 259  Q
    |||||||||||| |||||||||||||||||||    
T  8174474 atcggtttaacatggtttgaaacgggcaggtg 8174505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 43805725 - 43805803
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatat-gccactatatat 122  Q
    |||||||||||| ||||  ||| |||| || | ||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  43805725 ttttaatccaaaagctgttaattattcttatcgttctcacataaaattatcattctcagttgatatggccactatatat 43805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 30392066 - 30392110
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgc 112  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||    
T  30392066 attcctatcattctcacatataaatatcattctcacctgatatgc 30392110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 38997045 - 38997088
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatg 111  Q
    ||||||||||||||||  |||| |||||||||||||||||||||    
T  38997045 attcctaccattctcatgtaaacatatcattctcacttgatatg 38997088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 30391495 - 30391461
Alignment:
Q  76 cattctcacataaaaatatcattctcacttgatat 110  Q
    |||||||||||| ||||||||||||||||||||||    
T  30391495 cattctcacatataaatatcattctcacttgatat 30391461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 39738809 - 39738850
Alignment:
Q  10 tgttttaatagagcatttaaatctcagccattagtttttaat 51  Q
    ||||||||| |||||||||||||||| ||||||| |||||||    
T  39738809 tgttttaattgagcatttaaatctcaaccattagcttttaat 39738850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 23175271 - 23175326
Alignment:
Q  68 attcctaccattctcacataaaaatatc-attctcacttgatatgccactatatata 123  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  23175271 attcctatcattctcacataaca-tatccattctcacttgatatgcccctatatata 23175326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 23586528 - 23586583
Alignment:
Q  68 attcctaccattctcacataaaaatatc-attctcacttgatatgccactatatata 123  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  23586528 attcctatcattctcacataaca-tatccattctcacttgatatgcccctatatata 23586583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 29720396 - 29720308
Alignment:
Q  23 catttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg 111  Q
    |||||||||||||||| |||  |  |||||  |||||||||||||  | ||  |||||||||||||||||| ||||||||  |||||||    
T  29720396 catttaaatctcagccgttaaatcataatctgaaggctgaaaatccattctcacattctcacataaaaataccattctcatatgatatg 29720308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 36780006 - 36779942
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgata 109  Q
    ||||||||||||||||| |||| | | ||   |||||||||||||| |||||||||||| |||||    
T  36780006 ttttaatccaaaggctggaaattaattctcatattctcacataaaattatcattctcacatgata 36779942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 1122733 - 1122871
Alignment:
Q  121 ataggggtggacaagaacccgtggcccgccggaatccgcaataaccgagttaatttttgatcaaacgggcggttcgggtcggtcaatcgggtgagcagac 220  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1122733 atagaggtggacaagaacccgtggcccgccggaacccgcaataaccgagtcaatttttgatcaaacgggcggttcgggtcggtcaatcgggtgagcagac 1122832  T
Q  221 tgtcagaatcggtttaacacggtttgaaacgggcaggtg 259  Q
    |||||||||||||||||| || |||||||| ||||||||    
T  1122833 tgtcagaatcggtttaacccgatttgaaacaggcaggtg 1122871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 17219108 - 17219042
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg 111  Q
    |||||||| || |||| ||| |||||||||||||||||||||||||   ||||||||||||||||||    
T  17219108 ttttaatctaatggctcaaattcattcctaccattctcacataaaatactcattctcacttgatatg 17219042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 17219768 - 17219812
Alignment:
Q  66 tcattcctaccattctcacataaaaatatcattctcacttgatat 110  Q
    |||||||||||||||||||||||||   |||||||||||||||||    
T  17219768 tcattcctaccattctcacataaaatactcattctcacttgatat 17219812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 51308490 - 51308612
Alignment:
Q  1 gcaaataattgttttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51308490 gcaaataattgttttaatagagcatttaaatctcagccattagtttttaatccaaagactgaaaatcattcctaccattctcacataaaaatatcattct 51308589  T
Q  101 cacttgatatgccactatatata 123  Q
    |||||||||||||  ||||||||    
T  51308590 cacttgatatgcctatatatata 51308612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 52668179 - 52668276
Alignment:
Q  12 ttttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg 111  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||    
T  52668179 ttttaatagagcatttaaatctcagccattagttttttatctcaaggctgaaaatcattcctaccat--tcgcattaaaatatcattctcacttgatatg 52668276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 38599887 - 38599932
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  38599887 attcttaccattctcatataaacatatcattctcacttgatatgcc 38599932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 45817361 - 45817281
Alignment:
Q  44 tttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg-ccactatatata 123  Q
    ||||||||| || || ||| |||  ||||||||||||||||||| ||| ||||||||||| ||||||| || |||||||||    
T  45817361 tttttaatctaatggttgataattgttcctaccattctcacatataaaaatcattctcacatgatatgtcccctatatata 45817281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 46315403 - 46315447
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgc 112  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||    
T  46315403 attcctaccattctcacatataaatatcattctcatgtgatatgc 46315447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 40317245 - 40317145
Alignment:
Q  13 tttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgc 112  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  40317245 tttaatagagcatttaaatcttagccattagtttttaattcaaaggctgaaaattattcttaccattctcacataaaaatatcattctcacttgatatgc 40317146  T
Q  113 c 113  Q
    |    
T  40317145 c 40317145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 40317772 - 40317855
Alignment:
Q  1 gcaaataattgttttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcac 84  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  40317772 gcaaataattgttttaatagagcatttaaatctcaaccattaatttttaatccaaaggctgaaaatctttcctaccattctcac 40317855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 35020228 - 35020127
Alignment:
Q  23 catttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg-ccactatata 121  Q
    |||||||||||||||| |||  |  |||||  |||||||||||||  | ||  |||||||||||||||||||||||||||  ||||||| || |||||||    
T  35020228 catttaaatctcagccgttaaatcataatctgaaggctgaaaatccattctcacattctcacataaaaatatcattctcatatgatatgtcctctatata 35020129  T
Q  122 ta 123  Q
    ||    
T  35020128 ta 35020127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 39862294 - 39862351
Alignment:
Q  9 ttgttttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaat 66  Q
    ||||||||||| ||||||| ||||||||||||||  | | ||||||||||||||||||    
T  39862294 ttgttttaataaagcattttaatctcagccattaaatgtgaatccaaaggctgaaaat 39862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 1274493 - 1274561
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||| ||||||| | |||||||||||||||||||  ||| |||| |||||||||  |||||||||    
T  1274493 ttttaatctaaaggctcacaatcattcctaccattctcgtatataaatgtcattctcatgtgatatgcc 1274561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 11112347 - 11112391
Alignment:
Q  66 tcattcctaccattctcacataaaaatatcattctcacttgatat 110  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||    
T  11112347 tcattcctttcattctcacatacaaatatcattctcacttgatat 11112391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 22475084 - 22475019
Alignment:
Q  48 taatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    ||||||||||||  | ||||||||||| |||||||||||||   | |||||||||| |||||||||    
T  22475084 taatccaaaggcccataatcattcctatcattctcacataactttgtcattctcacatgatatgcc 22475019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 28930992 - 28930924
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatc-attctcacttgatatgcc 113  Q
    |||||||||||||| ||| ||| ||||||| |||||||||||||   |||| ||||||||||||||||||    
T  28930992 ttttaatccaaaggttgataattattcctatcattctcacataatt-tatccattctcacttgatatgcc 28930924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 28931475 - 28931543
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatc-attctcacttgatatgcc 113  Q
    |||||||||||||| ||| ||| ||||||| |||||||||||||   |||| ||||||||||||||||||    
T  28931475 ttttaatccaaaggttgataattattcctatcattctcacataatt-tatccattctcacttgatatgcc 28931543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 37810391 - 37810323
Alignment:
Q  45 ttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||| || ||||| || |||||| || ||||||||| || ||||||||||||||  |||||||||    
T  37810391 ttttaatctaatggctgtaattcattcatatcattctcacctataaatatcattctcatgtgatatgcc 37810323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 13355962 - 13356061
Alignment:
Q  12 ttttaatagagcatttaaatctcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg 111  Q
    ||||||||||||| |||||| |||||| ||| ||||||||| || || | ||||||||||||| |||||||| |||| |   ||||||||||||||||||    
T  13355962 ttttaatagagcaattaaatatcagcctttaatttttaatctaatggttcaaaatcattcctatcattctcaaataagatgttcattctcacttgatatg 13356061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 29200752 - 29200705
Alignment:
Q  66 tcattcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||    
T  29200752 tcattcctaccattctcacataaaatactcattctcacttgatatgcc 29200705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 8172872 - 8172926
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgccactatatata 123  Q
    ||||||| |||||||||||||| || | |||||||||||||||||| |||||||||    
T  8172872 attcctatcattctcacataaatatgttattctcacttgatatgcc-ctatatata 8172926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11434661 - 11434619
Alignment:
Q  10 tgttttaatagagcatttaaatctcagccattagtttttaatc 52  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||    
T  11434661 tgttttaattgagcatttaaatctcaaccattagcttttaatc 11434619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 28295433 - 28295522
Alignment:
Q  35 agccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg-ccactatatata 123  Q
    |||||||| ||||| ||| |  |||| ||||| |||||||| |||||||| |||||   |||||||||||||||||| || |||||||||    
T  28295433 agccattaatttttgatctagtggctcaaaattattcctactattctcacctaaaatactcattctcacttgatatgtcccctatatata 28295522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 28516640 - 28516551
Alignment:
Q  35 agccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatg-ccactatatata 123  Q
    |||||||| ||||| ||| |  |||| ||||| |||||||| |||||||| |||||   |||||||||||||||||| || |||||||||    
T  28516640 agccattaatttttgatctagtggctcaaaattattcctactattctcacctaaaatactcattctcacttgatatgtcccctatatata 28516551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 34243554 - 34243514
Alignment:
Q  12 ttttaatagagcatttaaatctcagccattagtttttaatc 52  Q
    ||||||| |||||||||||||||||||||||  ||||||||    
T  34243554 ttttaatggagcatttaaatctcagccattaacttttaatc 34243514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 35650902 - 35650812
Alignment:
Q  33 tcagccattagtttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgccactatatata 123  Q
    |||||| ||||||||||||| || || | ||||||||||||| ||||||||||||| |    ||||||||||||||||||| | |||||||    
T  35650902 tcagccgttagtttttaatctaatggttcaaaatcattcctatcattctcacataagatgtccattctcacttgatatgcccccatatata 35650812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 571696 - 571750
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgccactatatata 123  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  571696 attcttaccattctcatataaacatatcattctcacttgatatgcc-ctatatata 571750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 8351364 - 8351319
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  8351364 attcttaccattctcatataaacatatcattctcacttgatatgcc 8351319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 23709582 - 23709524
Alignment:
Q  64 aatcattcctaccattctcacataaaaatatcattctcacttgatatgccactatatat 122  Q
    ||||||||||| |||||||| ||| || |||||||||||  ||||||||| ||||||||    
T  23709582 aatcattcctatcattctcatatataactatcattctcatgtgatatgcccctatatat 23709524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 23728038 - 23727980
Alignment:
Q  64 aatcattcctaccattctcacataaaaatatcattctcacttgatatgccactatatat 122  Q
    ||||||||||| |||||||| ||| || |||||||||||  ||||||||| ||||||||    
T  23728038 aatcattcctatcattctcatatataactatcattctcatgtgatatgcccctatatat 23727980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 23746494 - 23746436
Alignment:
Q  64 aatcattcctaccattctcacataaaaatatcattctcacttgatatgccactatatat 122  Q
    ||||||||||| |||||||| ||| || |||||||||||  ||||||||| ||||||||    
T  23746494 aatcattcctatcattctcatatataactatcattctcatgtgatatgcccctatatat 23746436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 6114997 - 6115042
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||||||||||||||| |||| | ||||||||||||||||||    
T  6114997 attcctaccattctcacatataaatgttattctcacttgatatgcc 6115042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 19330201 - 19330279
Alignment:
Q  44 tttttaatccaaaggctgaaaatcattcctaccattctcacataaaaatatcattctcacttgatatgccactatatata 123  Q
    ||||||||| || || ||| |||  ||||||||||||||||||| |||  |||||||||| ||||||||| |||||||||    
T  19330201 tttttaatctaatggttgataattgttcctaccattctcacatataaaagtcattctcacatgatatgcc-ctatatata 19330279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 6115100 - 6115055
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||||    
T  6115100 attcctaccattcttacatataaatgttattctcacttgatatgcc 6115055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 27819230 - 27819275
Alignment:
Q  68 attcctaccattctcacataaaaatatcattctcacttgatatgcc 113  Q
    |||||||| ||||||||||| ||| | |||||||||||||||||||    
T  27819230 attcctactattctcacatataaaaaacattctcacttgatatgcc 27819275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University