View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10736_low_9 (Length: 265)
Name: NF10736_low_9
Description: NF10736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10736_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28773177 - 28772927
Alignment:
| Q |
1 |
aaacctatattcaatgagaatccactactttgccatgtcacacccccttctggatggttattttgaaactcatggaaaaatgttagcctctcattgaacg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28773177 |
aaacttatattcaatgagaatccactactttgccatgtcacccccccttctggatggttattttgaaactcatggaaaaatgttagcctctcattgaacg |
28773078 |
T |
|
| Q |
101 |
tcagcgtacaactgttttacaatgacaatgtatgaccgttaaactctgtaaaacgtgcttcaatttctagtaatatgcgggaacagatcttctctggcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28773077 |
tcagcgtacaactgttttacaatgacaatgtatgaccgttaaactctgtaaaacgtgcttcaatttctagtaatatgcgggaacagatcttctctggcga |
28772978 |
T |
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| Q |
201 |
ggtttttattgggtggaaatcctcatccttctattctctgttaatggcttt |
251 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28772977 |
ggtttttattgggtggaaatcctcacccttctattctctgttaatggcttt |
28772927 |
T |
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