View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_high_3 (Length: 306)
Name: NF10737_high_3
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 1037939 - 1037777
Alignment:
| Q |
132 |
ttagagaaataatttgttacagtctgttttccataattgtcattttcttttgcgtgttcgacaagattcttcatcttgttcatcaattcatcacatattt |
231 |
Q |
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| T |
1037939 |
ttagagaaagaatttgttacagtctgttttccataattgtcattttcttttgcgtgttcaacaagattcttcatcttgttcatcaattcatcacatattt |
1037840 |
T |
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| Q |
232 |
tcattgatttatttgctttgatctttccttattctgcaagattcttactcatgcaatttttctt |
295 |
Q |
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| T |
1037839 |
tcattgatttatttgctttgatc-ttccttattctgcaagattctcactcatgcaatttttctt |
1037777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 1038056 - 1037996
Alignment:
| Q |
17 |
atagtaagatagagtg--gagctattaaaagctacatgtatcttctatctcaagtaatgga |
75 |
Q |
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| T |
1038056 |
atagtaagatagagtgtggagctattaaaaactacatgtatcttctatctcaagtaatgga |
1037996 |
T |
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