View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10737_low_11 (Length: 331)
Name: NF10737_low_11
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_11 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 12041043 - 12041359
Alignment:
| Q |
1 |
tcagtctggtaagtttaactccacttttcgttatagaaagaaaatcaaatatannnnnnnnnnnnnnnatatatatgcataatgtaacttatgttactgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12041043 |
tcagtctggtaagtttaactccacttttcgttatagaaagaaaatcaaatatatgtgtgggtgtgtgtatatatatgcataatgtaacttatgttactgc |
12041142 |
T |
|
| Q |
101 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaaccatcctgaagcatcggtgttta |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12041143 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaaccatcctgaagcattggtgttta |
12041242 |
T |
|
| Q |
201 |
ttaacaattgcaatgttattcttaggtaaataatatgagagagaatataacaggccacaaggttgaataaagtgactcataaatgattgtaatgcagggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12041243 |
ttaacaattgcaatgttattcttaggtaaataatatgagagagaatataccaggtcacaaggttgaataaagtgactcataaatgattgtaatgcagggc |
12041342 |
T |
|
| Q |
301 |
tataatggagaaatgtg |
317 |
Q |
| |
|
||||||||||||||||| |
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| T |
12041343 |
tataatggagaaatgtg |
12041359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20161350 - 20161046
Alignment:
| Q |
1 |
tcagtctggtaagtttaactccacttttcgttatagaaagaaaatcaaatatannnnnnnnnnnnnnnatatatatgcataatgtaacttatgttactgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||| | ||||||||| |
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| T |
20161350 |
tcagtctggtaagtttaactcaacttttcattatagaaagaaaatcaaatgtatg--------------tatatatgcataatgtaacctgtgttactgc |
20161265 |
T |
|
| Q |
101 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaaccatcctgaagcatcggtgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |
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|
| T |
20161264 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagccaatcatcctgaagcattggtgttta |
20161165 |
T |
|
| Q |
201 |
ttaacaattgcaatgttattcttaggtaaataatatg--agagagaatataacaggccacaaggttgaataaagtgactcata--aatgattgtaatgca |
296 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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|
| T |
20161164 |
ttaacaattgcaatgttattcttaggtaaacgatatgaaagagaaaatataacaggccacaaggttgaataaagtgactcacaagattgattgtaatgca |
20161065 |
T |
|
| Q |
297 |
gggctataatggagaaatg |
315 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
20161064 |
gggctataatggagaaatg |
20161046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 24278128 - 24277811
Alignment:
| Q |
1 |
tcagtctggtaagtttaactccacttttcgttatagaaagaaaatcaaatatannnnnnnnnnnnnnnatatatatgcataatgtaacttatgttactgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||| |||||| ||||||||| |
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|
| T |
24278128 |
tcagtctggtaagtttaactccactttccattatagaaagaaaatcaaatgtatg--------------tatatatgcataatctaacttgtgttactgc |
24278043 |
T |
|
| Q |
101 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaaccatcctgaagcatcggtgttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
24278042 |
tttcatgcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaatcatcctgaagcattggtgttta |
24277943 |
T |
|
| Q |
201 |
ttaacaattgcaatgttattcttaggtaaataatatgagagagaatataacaggccacaaggttgaataaag---------------tgactcataaatg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||| || |
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|
| T |
24277942 |
ttaacaattgcaatgttattcttaggtaaatgatatgagagaaaatatagcaggccacaaggttgaataaagcggtacacatttaactgactcataagtg |
24277843 |
T |
|
| Q |
286 |
attgtaatgcagggctataatggagaaatgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24277842 |
attgtaatgcagggctataatggagaaatgtg |
24277811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 8050798 - 8050478
Alignment:
| Q |
1 |
tcagtctggtaagtttaactccacttttcgttatagaaagaaaatcaaatatannnnnnnnnnnnnnnatatatatgcataatgtaacttatgttactgc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
8050798 |
tcagtttggtaagtttaactccacttttcgttatagaaagaaaatcaaatgtatg--------------tatatatgcataatgtaactcatgttactgc |
8050713 |
T |
|
| Q |
101 |
tttcat-gcttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagctgggaatgcgtttaaagctaaccatcctgaagcatcggtgttt |
199 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
8050712 |
tttcattgtttcaggtgtttcatcaactaaatgggctattgagtatgaagaaccagccgggaatgcgtttaaagctaatcatcctgaagcattggtgttt |
8050613 |
T |
|
| Q |
200 |
attaacaattgcaatgttattcttaggtaaataatatgagagag--aatataacaggccacaaggttgaataaag---------------tgactcataa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
8050612 |
attaacaattgcaatgttattcttaggtaaatgatatgagagagaaaatataacaggccacaaggttgaataaagaggtacacatttaactgactcataa |
8050513 |
T |
|
| Q |
283 |
atgattgtaatgcagggctataatggagaaatgtg |
317 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
8050512 |
gtgattgcaatgcagggctataatggagaaatgtg |
8050478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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