View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_12 (Length: 313)
Name: NF10737_low_12
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 47969587 - 47969293
Alignment:
| Q |
1 |
agtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattcccagacaagtgttgttcaagttcaacatcatcatcgaggtcggag |
100 |
Q |
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| T |
47969587 |
agtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattgccagacaagtgttgttcaagttcaacatcatcgtcgaggtcggag |
47969488 |
T |
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| Q |
101 |
agagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattactacatgaaactactgttctttgtttggttctgtgga |
200 |
Q |
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| T |
47969487 |
agagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattactacatgaaactactgttctttgtttggttctgtgga |
47969388 |
T |
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| Q |
201 |
tgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtgaatttattctttgattctgagtttgaggt |
295 |
Q |
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| T |
47969387 |
tgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtgaatttgttatttgattctgagtttgaggt |
47969293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 8375672 - 8375736
Alignment:
| Q |
203 |
agtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtga |
267 |
Q |
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| T |
8375672 |
agtttggaaggtgtgaagtggaagtgaaagtgttgaaaacaagttttgatagaaggaatgtgtga |
8375736 |
T |
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