View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10737_low_15 (Length: 294)
Name: NF10737_low_15
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 41588179 - 41588458
Alignment:
| Q |
1 |
gcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcgcttaaaactcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588179 |
gcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcgcttaaaactcctca |
41588278 |
T |
|
| Q |
101 |
ccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctccggattcaaccttttctttcatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588279 |
ccggaattgcaccatcaccattaccagttgcaactgcagcaccttgttgttctaacacggtcaccttatcctctccggattcaaccttttctttcatcgc |
41588378 |
T |
|
| Q |
201 |
cgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttcacctc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588379 |
cgatcgagtaattcgcttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcaccttcacctc |
41588458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 274
Target Start/End: Original strand, 41588165 - 41588323
Alignment:
| Q |
116 |
caccattaccagttgcaactgcagcaccttgttgttctaacacggtcaatttatcctctccggattcaaccttttctttcatcgccgatcgagtaattcg |
215 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||||| | | | | ||||| ||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
41588165 |
caccatcaccacttgcaactgcagcaccttgttcttctaacacattgactgtctcctcgccggattcaactttttctttcttcgccgatcgcgtaattcg |
41588264 |
T |
|
| Q |
216 |
cttgaaattcttcaccggcacctcaccatcacctttaccaactgcaacagcatcacctt |
274 |
Q |
| |
|
||| ||| || ||||||| | |||||||||| |||||| |||||| ||| |||||| |
|
|
| T |
41588265 |
cttaaaactcctcaccggaattgcaccatcaccattaccagttgcaactgcagcacctt |
41588323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University