View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10737_low_17 (Length: 262)

Name: NF10737_low_17
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10737_low_17
NF10737_low_17
[»] chr4 (4 HSPs)
chr4 (22-250)||(23062259-23062487)
chr4 (33-250)||(32880670-32880874)
chr4 (91-176)||(43992238-43992323)
chr4 (79-173)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (22-250)||(28592866-28593093)
[»] chr6 (2 HSPs)
chr6 (22-250)||(25907261-25907489)
chr6 (97-200)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (22-250)||(21279261-21279489)
chr8 (95-204)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (163-250)||(30302015-30302101)
chr5 (133-179)||(14779531-14779577)
chr5 (97-173)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (79-229)||(9817132-9817282)
chr7 (79-229)||(10719057-10719207)
chr7 (160-206)||(20483935-20483981)
chr7 (91-179)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (79-229)||(15229641-15229790)
chr1 (82-211)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (95-197)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (95-204)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (97-203)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 23062487 - 23062259
Alignment:
22 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 121  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062487 tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 23062388  T
122 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062387 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 23062288  T
222 taatgatgaaggggtacgaattgctgatg 250  Q
    |||||||||||||||||||||||||||||    
23062287 taatgatgaaggggtacgaattgctgatg 23062259  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 32880670 - 32880874
Alignment:
33 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 132  Q
    ||||||||||||| |||||||||||||||||||||||||||             ||||||||||||||||||||||||| || |||||||||||||||||    
32880670 aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca 32880756  T
133 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 232  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
32880757 cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag 32880856  T
233 gggtacgaattgctgatg 250  Q
    ||||||||||||||||||    
32880857 gggtacgaattgctgatg 32880874  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
91 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc 176  Q
    |||||||||||||||||||||||| ||||  ||||||| || || ||||||||||||||||| || ||||| || |||||||||||    
43992323 atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc 43992238  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
79 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 173  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||| |  |||||||| |||||||||||  | || || |||||||||||    
19318928 atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca 19318834  T

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Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 28593093 - 28592866
Alignment:
22 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
28593093 tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac 28592995  T
122 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
28592994 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga 28592895  T
222 taatgatgaaggggtacgaattgctgatg 250  Q
    |||||||||||||||||||||||||||||    
28592894 taatgatgaaggggtacgaattgctgatg 28592866  T

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Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 25907489 - 25907261
Alignment:
22 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 121  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907489 tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 25907390  T
122 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25907389 gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga 25907290  T
222 taatgatgaaggggtacgaattgctgatg 250  Q
    |||||||||||||||||||||||||||||    
25907289 taatgatgaaggggtacgaattgctgatg 25907261  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
97 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 196  Q
    |||||||||| ||| ||| ||||  |||| || || ||||||||||||||||| || |||||||| | ||| ||||||||  |||| || ||||||||||    
21695849 caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga 21695948  T
197 aggt 200  Q
    ||||    
21695949 aggt 21695952  T

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Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 21279489 - 21279261
Alignment:
22 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 121  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || |    
21279489 tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac 21279390  T
122 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 221  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||   |||||||| |||||||| ||||||||||||||||||| |||||||||| ||||    
21279389 gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga 21279290  T
222 taatgatgaaggggtacgaattgctgatg 250  Q
    |||||||||| |||||||| |||||||||    
21279289 taatgatgaacgggtacgagttgctgatg 21279261  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
95 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 194  Q
    |||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || |||||    
28164989 ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa 28164890  T
195 gaaggtaaac 204  Q
    ||| ||||||    
28164889 gaaagtaaac 28164880  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 30302015 - 30302101
Alignment:
163 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
30302015 aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 30302101  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
133 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 179  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||||||    
14779531 cactggtatcgtgatggggacttgaacaccaattttttttatgcttc 14779577  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
97 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 173  Q
    |||||||||| ||||||||||||  |||| || || ||||||||||| |||||  ||||||| || ||||| |||||    
20584724 caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca 20584800  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
79 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 178  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
9817282 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 9817183  T
179 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 229  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
9817182 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 9817132  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
79 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 178  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
10719207 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 10719108  T
179 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 229  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
10719107 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 10719057  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
160 accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg 206  Q
    |||||||||||||||||||| |||||||  ||||| |||||||||||    
20483935 accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg 20483981  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
91 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 179  Q
    ||||| ||||| ||||| |||||||| ||||| || || || || |||||||||||||||||  | || || || ||||||||||||||    
21115432 atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc 21115520  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
79 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 178  Q
    ||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| |||    || ||||||    
15229641 atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt 15229739  T
179 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 229  Q
    ||||||| ||  |||| ||||||||||| |||||||||||||| |||||||    
15229740 cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg 15229790  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
82 acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag 181  Q
    |||||| ||||||||||||| ||||| |||||| | || ||||| ||||  || |||||||||| ||| ||  ||||||| |||||||||||||| ||      
10505436 acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta 10505337  T
182 ccacgtcaagaaagaaggtaaaccgcatta 211  Q
    |||| || | |||||||||||||| |||||    
10505336 ccacatctaaaaagaaggtaaaccacatta 10505307  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 540 - 438
Alignment:
95 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 194  Q
    ||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || |||||    
540 ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa 441  T
195 gaa 197  Q
    |||    
440 gaa 438  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
95 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 194  Q
    ||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || ||  ||||    
26815 ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa 26716  T
195 gaaggtaaac 204  Q
    ||| ||||||    
26715 gaaagtaaac 26706  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
97 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 196  Q
    |||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || |||||||    
34932178 caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga 34932277  T
197 aggtaaa 203  Q
    | |||||    
34932278 aagtaaa 34932284  T

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