View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_18 (Length: 247)
Name: NF10737_low_18
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_18 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 46933180 - 46933406
Alignment:
| Q |
14 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933180 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattca |
46933279 |
T |
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| Q |
114 |
tggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933280 |
tggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttg |
46933379 |
T |
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| Q |
214 |
tctaatagaaccattccacaatctgtg |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46933380 |
tctaatagaaccattccacaatctgtg |
46933406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 46926315 - 46926541
Alignment:
| Q |
14 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || | || ||||| |
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| T |
46926315 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcgaaaattca |
46926414 |
T |
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| Q |
114 |
tggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttg |
213 |
Q |
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||| || |||| |||||||||||||||| |||||||||| | || |||||||||| | ||||| || ||||| || || ||||||||| |||||||| |
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| T |
46926415 |
tggccctttaatgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttg |
46926514 |
T |
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| Q |
214 |
tctaatagaaccattccacaatctgtg |
240 |
Q |
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|| || |||| ||| || ||| ||||| |
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| T |
46926515 |
tcaaagagaaacatacctcaaactgtg |
46926541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 11107743 - 11107517
Alignment:
| Q |
14 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattca |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | || || | |
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| T |
11107743 |
ataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatata |
11107644 |
T |
|
| Q |
114 |
tggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttg |
213 |
Q |
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|||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||||||| | |||||| |
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| T |
11107643 |
tggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttg |
11107544 |
T |
|
| Q |
214 |
tctaatagaaccattccacaatctgtg |
240 |
Q |
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|| ||||| || |||||||||||||| |
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| T |
11107543 |
tcaaataggactgttccacaatctgtg |
11107517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 3182 - 2956
Alignment:
| Q |
14 |
ataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattca |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | || || | |
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| T |
3182 |
ataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatata |
3083 |
T |
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| Q |
114 |
tggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttg |
213 |
Q |
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|||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||||||| | |||||| |
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| T |
3082 |
tggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttg |
2983 |
T |
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| Q |
214 |
tctaatagaaccattccacaatctgtg |
240 |
Q |
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|| ||||| || |||||||||||||| |
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| T |
2982 |
tcaaataggactgttccacaatctgtg |
2956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29975458 - 29975376
Alignment:
| Q |
16 |
aagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaa |
98 |
Q |
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|||||||||||||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
29975458 |
aagcttccaccaggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaaatccttagccaa |
29975376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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