View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_2 (Length: 453)
Name: NF10737_low_2
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 41 - 435
Target Start/End: Complemental strand, 44173646 - 44173255
Alignment:
| Q |
41 |
tacaaatacaaggaagtacacaaaaaacgccgatagacaatcacgttagtgtaagtttatctatccgctttccgctaacatgaataaatagcttaataac |
140 |
Q |
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| T |
44173646 |
tacaaatacaaggaagtacacaaaaaacgccgatagacaatcacgttagtgtaagtttatctatccgctctccgctagcatgaataaatagcttaataac |
44173547 |
T |
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| Q |
141 |
gattatttacctgtcaggattattttaaattaatattattattattgtgtaatctaaattgctaaaatctcatcttaacgaccaagattaaagactacac |
240 |
Q |
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| T |
44173546 |
gattatttaccggtcaagattattttaaattaatattattatt---gtgtaatctaaattgctaaaatctcatcttaacgaccaagattaaagactacac |
44173450 |
T |
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| Q |
241 |
gacgtcatgaataaaacccgaaatgtataacctctgagacggaaaaatgacttccacttgcaaatggcgggtcgtgaaaattagttgaattttttactaa |
340 |
Q |
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| T |
44173449 |
gacgtcatgaataaaatccgaaatgtataacctctgagacggaaaaacgacttccacttgcaaatggtgggtcgtgaaaattagttggattttttactaa |
44173350 |
T |
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| Q |
341 |
actttatttaccttacgaccaaactctgaatcctgggaaacggttaaacaaaatggatggttagcaatccaattggaatcaatgacatgatattt |
435 |
Q |
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| T |
44173349 |
actttatttaccttgtgaccaaactctgaatcctggaaaacagttaaacaaaatggatggttagcaatccaattggaatcaatgacatgatattt |
44173255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 46657267 - 46657227
Alignment:
| Q |
331 |
tttttactaaactttatttaccttacgaccaaactctgaat |
371 |
Q |
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| T |
46657267 |
ttttcactaaactttatttacctttcgaccaaactctgaat |
46657227 |
T |
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