View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_21 (Length: 237)
Name: NF10737_low_21
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1835750 - 1835968
Alignment:
| Q |
1 |
gaggcaacaaacagttttggcaacgcatgaatgacatgtatctgctcaaaagtcactgctggacaactgaaagaggccagaaaagccacatgttgtcggc |
100 |
Q |
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| T |
1835750 |
gaggcaacaaacagttttggcaacgcatgaatgacatgtatctgctcaaaagtcactgctagacaactgcaagaggccaaaaaagccacatgttgtcggc |
1835849 |
T |
|
| Q |
101 |
gaattccctctacattcggactgaaagtgttgaggaagccatgacggagcttgctgaagttttcaattccatagagcattccccttaaaccagcttatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1835850 |
gaattccctctacattcggactgaaagtgttgaggaagccatgaaggagcttgctgaagttttcaattccatagagcattccccttaaaccagcttatga |
1835949 |
T |
|
| Q |
201 |
catatccataagctataac |
219 |
Q |
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||||||||||||||||||| |
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| T |
1835950 |
catatccataagctataac |
1835968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1844229 - 1844320
Alignment:
| Q |
1 |
gaggcaacaaacagttttggcaacgcatgaatgacatgtatctgctcaaaagtcactgctggacaactgaaagaggccagaaaagccacatg |
92 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||| || |||||||||||||||||||| |
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| T |
1844229 |
gaggcaacaaacagttttggcaatgcatgaatgacaagtatctgctcaaaagtcacttctggagaacttaatgaggccagaaaagccacatg |
1844320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 1844358 - 1844390
Alignment:
| Q |
187 |
aaaccagcttatgacatatccataagctataac |
219 |
Q |
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| T |
1844358 |
aaaccagcttatgacatatccataagctataac |
1844390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 14364733 - 14364557
Alignment:
| Q |
4 |
gcaacaaacagttttggcaacgcatgaatgacatgtatctgctcaaaagtcactgctggacaactgaaagaggccagaaaagccacatgttgtcggcgaa |
103 |
Q |
| |
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||||||||||||||||||| |||| ||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
14364733 |
gcaacaaacagttttggcagggcataaatgacaggaatctgctcaaaaatcactgctggagaactgaatgaggccagaaaagccacatgttgtccacgaa |
14364634 |
T |
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| Q |
104 |
ttccctctacattcggactgaaagtgttgaggaagccatgacggagcttgctgaagttttcaattccatagagcatt |
180 |
Q |
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| || | | || ||| ||||| ||||| ||||||||| | | | ||| ||||||||||||||| ||||||||||| |
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| T |
14364633 |
tgccttgagcgtttggaatgaaaatgttggggaagccatcaggaaactttctgaagttttcaattgcatagagcatt |
14364557 |
T |
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