View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10737_low_22 (Length: 236)

Name: NF10737_low_22
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10737_low_22
NF10737_low_22
[»] chr1 (4 HSPs)
chr1 (13-221)||(11892947-11893155)
chr1 (34-89)||(15784228-15784283)
chr1 (16-89)||(18556810-18556883)
chr1 (46-78)||(17830048-17830080)
[»] chr6 (5 HSPs)
chr6 (17-84)||(6909988-6910055)
chr6 (34-89)||(10401140-10401195)
chr6 (20-78)||(6538411-6538469)
chr6 (13-67)||(6016486-6016540)
chr6 (16-68)||(29754193-29754245)
[»] chr4 (1 HSPs)
chr4 (34-89)||(23277306-23277361)
[»] chr8 (4 HSPs)
chr8 (34-75)||(31916522-31916563)
chr8 (16-63)||(38750267-38750314)
chr8 (34-89)||(40859840-40859895)
chr8 (16-60)||(27028751-27028795)
[»] chr3 (3 HSPs)
chr3 (34-89)||(12704128-12704183)
chr3 (34-78)||(30574034-30574078)
chr3 (34-78)||(35959588-35959632)
[»] chr2 (4 HSPs)
chr2 (16-87)||(26201913-26201984)
chr2 (13-77)||(31744261-31744323)
chr2 (42-86)||(31561893-31561937)
chr2 (42-78)||(43570320-43570356)
[»] chr7 (2 HSPs)
chr7 (34-78)||(33552943-33552987)
chr7 (16-68)||(46078051-46078103)
[»] chr5 (1 HSPs)
chr5 (30-78)||(32372518-32372566)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 11893155 - 11892947
Alignment:
Q  13 atgaaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaacgcaccatagtatttaaatatatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11893155 atgaaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaacgcaccatagtatttaaatatatg 11893056  T
Q  113 atacaataggaagaaaaccagtgtagtatcctcaactgagccaaaatttatggaataatacacatgaacaatggtgaaacttatattgatgatgcttaca 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11893055 atacaataggaagaaaaccagtgtagtaacctcaactgagccaaaatttatggaataatacacatgaacaatggtgaaacttatattgatgatgcttaca 11892956  T
Q  213 tgtgtatag 221  Q
    |||||||||    
T  11892955 tgtgtatag 11892947  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 15784283 - 15784228
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    ||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  15784283 ttatacataagcgcttatcataataagtgcttgtgatataaactgtttatccaaac 15784228  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 18556883 - 18556810
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    |||||| || || |||| ||||||| |||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  18556883 aaaatagcttatacaagcttatacacaagcgctcgtcacgataagtgcttgtgctataagctgtttatccaaac 18556810  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 17830080 - 17830048
Alignment:
Q  46 gcttatcatgataagtgcttgtgacataagctg 78  Q
    |||||||||||||||||||||||| ||||||||    
T  17830080 gcttatcatgataagtgcttgtgatataagctg 17830048  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 6909988 - 6910055
Alignment:
Q  17 aaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatc 84  Q
    ||||| || ||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||    
T  6909988 aaatagcttatgtaagtttatacataagcacttatcatgataagtgcttgtgatataaactgtttatc 6910055  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 10401140 - 10401195
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||| ||||||    
T  10401140 ttatacataagcgcttatcatgataagtgcttgtgcaataagttgtttaaccaaac 10401195  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 6538469 - 6538411
Alignment:
Q  20 taactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||||||  ||||||||    
T  6538469 taacttatgcaagcttatacataagcgcttatcattataagtgcttgtgctataagctg 6538411  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 6016486 - 6016540
Alignment:
Q  13 atgaaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgt 67  Q
    |||||||||||| ||||||| ||||| | ||||||||||| ||||||||| ||||    
T  6016486 atgaaaataacttatgcaagattatatataagcgcttatcgtgataagtgtttgt 6016540  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 29754193 - 29754245
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtg 68  Q
    |||||| || ||||||| | ||||| ||||||||||||||||||| |||||||    
T  29754193 aaaatagcttatgcaagctaatacataagcgcttatcatgataagcgcttgtg 29754245  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 23277361 - 23277306
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    ||||||| |||| |||||||| |||||||||||||  |||||||||||||||||||    
T  23277361 ttatacataagctcttatcattataagtgcttgtgctataagctgtttatccaaac 23277306  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 31916563 - 31916522
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataag 75  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  31916563 ttatacataagcgcttatcatgataagtgcttatgacataag 31916522  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 38750314 - 38750267
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgc 63  Q
    |||||| || ||||||| ||||||| ||||||||||||||||||||||    
T  38750314 aaaatagcttatgcaagcttatacataagcgcttatcatgataagtgc 38750267  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 40859840 - 40859895
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    ||||||| |||||||||||||||||||  ||||||  |||||||| ||||||||||    
T  40859840 ttatacataagcgcttatcatgataagcacttgtgctataagctgcttatccaaac 40859895  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 27028795 - 27028751
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataag 60  Q
    ||||||||| ||| ||| |||||||||||| ||||||||||||||    
T  27028795 aaaataacttatgtaagcttatacaaaagcacttatcatgataag 27028751  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 12704128 - 12704183
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 89  Q
    ||||||| ||| | |||||||||||||||||||||  ||||||||| |||||||||    
T  12704128 ttatacacaagtgtttatcatgataagtgcttgtgttataagctgtatatccaaac 12704183  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30574034 - 30574078
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||    
T  30574034 ttatacataagcgcttatcatgataaatgcttatgatataagctg 30574078  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 35959588 - 35959632
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    ||||||| |||| |||||||||||||| |||||||| ||||||||    
T  35959588 ttatacataagctcttatcatgataagagcttgtgatataagctg 35959632  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 26201984 - 26201913
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaa 87  Q
    |||||| || ||||||| ||||| | ||| ||||||||||||||| |||||||  ||||| |||||||||||    
T  26201984 aaaatagcttatgcaagcttatatataagggcttatcatgataagcgcttgtgctataaggtgtttatccaa 26201913  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 31744323 - 31744261
Alignment:
Q  13 atgaaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtgacataagct 77  Q
    |||||||||||| | ||||| ||||||| |||||||||||||  ||||||||||||  |||||||    
T  31744323 atgaaaataacttacgcaagcttatacataagcgcttatcat--taagtgcttgtgctataagct 31744261  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 31561893 - 31561937
Alignment:
Q  42 aagcgcttatcatgataagtgcttgtgacataagctgtttatcca 86  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||    
T  31561893 aagcgcttatcatgataaacgcttgtgctataagctgtttatcca 31561937  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 43570356 - 43570320
Alignment:
Q  42 aagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    |||||||||||||||||||||||||||  ||||||||    
T  43570356 aagcgcttatcatgataagtgcttgtgctataagctg 43570320  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 33552943 - 33552987
Alignment:
Q  34 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||||    
T  33552943 ttatacataagcgcttatcatggtaagtgcttgtgcaataagctg 33552987  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 46078103 - 46078051
Alignment:
Q  16 aaaataactcatgcaagtttatacaaaagcgcttatcatgataagtgcttgtg 68  Q
    ||||||||| ||| ||| ||||||| ||||||||||||||||| ||| |||||    
T  46078103 aaaataacttatgtaagcttatacataagcgcttatcatgatatgtgtttgtg 46078051  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 32372566 - 32372518
Alignment:
Q  30 aagtttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 78  Q
    |||| |||||| ||| |||||||||||||||||||||||  ||||||||    
T  32372566 aagtgtatacataagggcttatcatgataagtgcttgtgctataagctg 32372518  T

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