View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_24 (Length: 228)
Name: NF10737_low_24
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 50407822 - 50407626
Alignment:
| Q |
15 |
caaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaac |
114 |
Q |
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| T |
50407822 |
caaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaac |
50407723 |
T |
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| Q |
115 |
aaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaatt |
211 |
Q |
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| T |
50407722 |
aaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccaagtgaggttccaatt |
50407626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 50385728 - 50385601
Alignment:
| Q |
80 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
179 |
Q |
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| T |
50385728 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50385629 |
T |
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| Q |
180 |
ttgtttttgggtatccgagtgaggttcc |
207 |
Q |
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| T |
50385628 |
ttttctttggatatcttagtgatgttcc |
50385601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 50390873 - 50390746
Alignment:
| Q |
80 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
179 |
Q |
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| T |
50390873 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50390774 |
T |
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| Q |
180 |
ttgtttttgggtatccgagtgaggttcc |
207 |
Q |
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| T |
50390773 |
ttttctttggatatcttagtgatgttcc |
50390746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 50394147 - 50394020
Alignment:
| Q |
80 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
179 |
Q |
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| T |
50394147 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50394048 |
T |
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| Q |
180 |
ttgtttttgggtatccgagtgaggttcc |
207 |
Q |
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| T |
50394047 |
ttttctttggatatcttagtgatgttcc |
50394020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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