View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_28 (Length: 218)
Name: NF10737_low_28
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_28 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38864583 - 38864782
Alignment:
| Q |
1 |
tttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatatatttggccctca |
100 |
Q |
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| T |
38864583 |
tttatactgccttccaatacttcgataaagataacaacgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatatatttggccctca |
38864682 |
T |
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| Q |
101 |
tttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctccatgagtataac |
200 |
Q |
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| T |
38864683 |
tttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctccatgagtataac |
38864782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38808806 - 38808610
Alignment:
| Q |
1 |
tttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatatatttggccctca |
100 |
Q |
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| T |
38808806 |
tttatactgccttccaattcttcgataaagataacagcgggtaaagaaaa-ttaaataaatccgtaaaaccaacatggttggatatatatttgcccttcc |
38808708 |
T |
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| Q |
101 |
tttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctccatgagtataac |
200 |
Q |
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| T |
38808707 |
tttggatactaattg--ttcaaatcttctgatctcactgcttttccataattaggtacatcaccattgaagaactagagcaagctctccatgagtataac |
38808610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 73188 - 73150
Alignment:
| Q |
7 |
ctgccttccaatacttcgataaagataacagcgggtaaa |
45 |
Q |
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| T |
73188 |
ctgccttccaatactttgataaagataacagcgggtaaa |
73150 |
T |
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