View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_3 (Length: 419)
Name: NF10737_low_3
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 35902055 - 35902245
Alignment:
| Q |
7 |
tctaacaaatgagccctctccctcgctcctatagcaaaagcttcctgacattttagacatcctctatgagtaaatcaatcaattcaaaatataattcaag |
106 |
Q |
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| T |
35902055 |
tctaacaaatgagccctctccctcgctcctatagcaaaagcttcctgacatttaagacatcctctatgagtaaatcaatcaattcaaaatataattcaag |
35902154 |
T |
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| Q |
107 |
ttaatggaagaaatggtgcttgaaattgatagtgtaatccagattgttcgatctcagatcaacgatcgagatcaattaccacgtaaaccta |
197 |
Q |
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| T |
35902155 |
ttaatggaagagacggtgcttgaaattgatagtgtaatccagattgttcgatctcagatcaacgatcgagatcaattaccacgtaatccta |
35902245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 248 - 407
Target Start/End: Original strand, 35902241 - 35902396
Alignment:
| Q |
248 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaatatattggacataccttgatgaaattac |
347 |
Q |
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| T |
35902241 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaat----tggacataccttgatgaaattac |
35902336 |
T |
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| Q |
348 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgacctt |
407 |
Q |
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| T |
35902337 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgacctt |
35902396 |
T |
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