View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10737_low_30 (Length: 207)

Name: NF10737_low_30
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10737_low_30
NF10737_low_30
[»] scaffold1519 (2 HSPs)
scaffold1519 (7-144)||(1286-1423)
scaffold1519 (141-207)||(416-482)


Alignment Details
Target: scaffold1519 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 1423 - 1286
Alignment:
Q  7 gaagcaaaggacaggagtttagacatgccatttccatgtctacatactacctctgaagtcttacgggtgtggtcccttcttcaggaacttcaggttctga 106  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1423 gaagcaaagtacaagagtttagacatgccatttccatgtctacatactacctctgaagtcttacgggtgcggtcccttcttcaggaacttcaggttctga 1324  T
Q  107 ttaccattcttgtggtttattgtgacagtcatggtatt 144  Q
    |||||| || ||||||||||||||||||||||||||||    
T  1323 ttaccagtcctgtggtttattgtgacagtcatggtatt 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 482 - 416
Alignment:
Q  141 tattgttgccttaagtcataatcctgtccttcattcaaggacaaaacataggtaactgaacattttc 207  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  482 tattgttgccttaagtcataatcctgtccttcattcatggacaaaacataggtaactgaacattttc 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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