View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10737_low_5 (Length: 394)
Name: NF10737_low_5
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 5042471 - 5042851
Alignment:
| Q |
1 |
aagaaaataaaacaaagcaaactacaatctaggaaatatagttccagctgcatcaatctt-agaaagctctggagctctaagtttggccataaaatccac |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||| |
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| T |
5042471 |
aagaaaagaaaacaaagcaaactacaatctaggaaatatagttccagctgcatcaatctttagaaagttctggagctccaagcttggccataaaatccac |
5042570 |
T |
|
| Q |
100 |
acattggttcctttctctcaaagtatgataaataacgacattcaaaatatcaaacagctcctttatgtattggatcaac-caacataactgtgaaacttc |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||| ||||||| |||||||||| | ||||||||||||||||| |
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| T |
5042571 |
acattggttcctttctctcagagtatgacaaatagcgacattcaaaatatcaaacaactcttttatgtcttggatcaacacggcataactgtgaaacttc |
5042670 |
T |
|
| Q |
199 |
attattggccctttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggctacaagagtccttgataaat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5042671 |
attattggccctttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggctacaagagtccctgataaat |
5042770 |
T |
|
| Q |
299 |
agcaaaaagtttcgcgtaaagaatgtcgaaagaattatggatgtgaccttaaaaacaagagaggcagtagcctgcattatt |
379 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5042771 |
aacaaaaagtttcgcgtaaagaatgtcgaaagaattatggatgtgaccttaaaaacaagagaggtagtagcctgcattatt |
5042851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 74 - 379
Target Start/End: Complemental strand, 3255851 - 3255544
Alignment:
| Q |
74 |
gctctaagtttggccataaaatccacacattggttcctttctctcaaagtatgataaataacgacattcaaaatatcaaacagctcctttatgtattgga |
173 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||||||||||||| || || ||||||||||| |||||||| ||||||||||| ||||| |
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|
| T |
3255851 |
gctctaagtttgaccataaaatctgcacattggttccattctctcaaagtatgacaattagtgacattcaaaagatcaaacaactcctttatgtcttgga |
3255752 |
T |
|
| Q |
174 |
tcaac-caacataactgtgaaacttcattattggccctttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttc |
272 |
Q |
| |
|
||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3255751 |
tcaacactgcataactgtgaaacttcattgttggccctttaattaaattaatacaatgcattgagtctgaatagcaaacaagatgagcaaaattcttttc |
3255652 |
T |
|
| Q |
273 |
cttggct-acaagagtccttgataaatagcaaaaagtttcgcgtaaagaatgtcgaaagaattatggatgtgaccttaaaaacaagagaggcagtagcct |
371 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||| || | |||| |||||| |||||||| |
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|
| T |
3255651 |
cttggctaacaagaggccatgataaatagcaaaaagtttcgcgtaaagaatgtcggtagaattgtggatgtaacatgaaaattctgagaggtagtagcct |
3255552 |
T |
|
| Q |
372 |
gcattatt |
379 |
Q |
| |
|
|||||||| |
|
|
| T |
3255551 |
gcattatt |
3255544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 3255963 - 3255898
Alignment:
| Q |
10 |
aaacaaagcaaactacaatctaggaaatatagttccagctgcatcaatc-ttagaaagctctggag |
74 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
3255963 |
aaacaaagcaaactacaatttaggaaagatagttctagctgcatcaatctttagaaggctctggag |
3255898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 112 - 367
Target Start/End: Complemental strand, 18055986 - 18055729
Alignment:
| Q |
112 |
ttctctcaaagtatgataaataacgacattcaaaatatcaaacagctcctttatgtattggatcaac-caacataactgtgaaacttcattattggccct |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||| | | |||||||| ||||||||||||| ||||||| |
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|
| T |
18055986 |
ttctctcaaagtatgataaatagtgacattcacatgatcaaacagctcctttatgtcttggataagcacaacataattgtgaaacttcatagctggccct |
18055887 |
T |
|
| Q |
211 |
ttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggct-acaagagtccttgataaatagcaaaaagtt |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||| |||| |
|
|
| T |
18055886 |
ttaattaaattaatacaatgcattgagtctgaatagcaaacaagatcaacaacattcttttccttggctaacaagaggccgtgataaatagcaaagagtt |
18055787 |
T |
|
| Q |
310 |
tcgcgtaaagaatgtcgaaagaattatggatgtgaccttaaaaacaagagaggcagta |
367 |
Q |
| |
|
| |||||| ||||||| |||||||||| |||| |||| |||||| |||||| |||| |
|
|
| T |
18055786 |
ccacgtaaaaaatgtcggaagaattatgaatgtaacctgaaaaacctgagaggtagta |
18055729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 5214120 - 5214263
Alignment:
| Q |
78 |
taagtttggccataaaatccacacattggttcctttctctcaaagtatgataaataacgacattcaaaatatcaaacagctcctttatgtattggatca- |
176 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||| || |||| ||| |||||||| |
|
|
| T |
5214120 |
taagcttggccataaaattcgcacattggttcccttctctcaaagtatgacgaatagtgacattcaaaaggtcaaacaacttctttttgtcttggatcag |
5214219 |
T |
|
| Q |
177 |
accaacataactgtgaaacttcattattggccctttaattaaat |
220 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5214220 |
tactgcataactgtgaaacttcattgttggccctttaattaaat |
5214263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 5214651 - 5214716
Alignment:
| Q |
214 |
attaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggct |
279 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5214651 |
attaaattaatacattgcattgagtctgaatagcaaacaagatcaataacattcttttccttggct |
5214716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 18056131 - 18056086
Alignment:
| Q |
15 |
aagcaaactacaatctaggaaatatagttccagctgcatcaatctt |
60 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18056131 |
aagcaaactacaatctaggaaagatagttccagctgcatcaatctt |
18056086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 5214004 - 5214069
Alignment:
| Q |
10 |
aaacaaagcaaactacaatctaggaaatatagttccagctgcatcaat-cttagaaagctctggag |
74 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||| ||| | ||||| ||||||||| |
|
|
| T |
5214004 |
aaacaaagcaaactacaatctaggaaagatagttccaactgcattaatccatagaaggctctggag |
5214069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 25757837 - 25757787
Alignment:
| Q |
10 |
aaacaaagcaaactacaatctaggaaatatagttccagctgcatcaatctt |
60 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
25757837 |
aaacaaagaaaactacaatctaggaaagatagttccagctgcatccatctt |
25757787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 12643978 - 12644231
Alignment:
| Q |
74 |
gctctaagtttggccataaaatccacacattggttcctttctctcaaagtatgataaataacgacattcaaaatatcaaacagctcctttatgtattgga |
173 |
Q |
| |
|
|||| ||||||||||||||| || |||||| |||| ||||| |||||||||| ||||| | ||||| | ||||| || ||| ||||||| ||| | |
|
|
| T |
12643978 |
gctccaagtttggccataaagtcagtacattgattcccttctcgcaaagtatgacaaatagtaatattcatatgatcaagcaactcttttatgtcttgaa |
12644077 |
T |
|
| Q |
174 |
tcaac-caacataactgtgaaacttcattattggccctttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttc |
272 |
Q |
| |
|
||||| | |||| |||| || ||||| |||||| ||||| | || || ||||||| ||||||||||| ||||||| |||||||| | |||||| |
|
|
| T |
12644078 |
tcaacactgcataggtgtggaatctcattgatggccccttaatgagattgatgcaatgcaaagagtctgaataacaaacaaaatcagcaatagccttttc |
12644177 |
T |
|
| Q |
273 |
cttggct-acaagagtccttgataaatagcaaaaagtttcgcgtaaagaatgtc |
325 |
Q |
| |
|
||| ||| ||| ||| || ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
12644178 |
cttagctaacatgagaccctgataaatagcaaaaagttccgcataaaggatgtc |
12644231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 12125456 - 12125373
Alignment:
| Q |
226 |
caatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggcta-caagagtccttgataaatagcaaaaagt |
308 |
Q |
| |
|
||||||| |||||| |||| ||||||| |||||||| || ||||| |||||||| || ||| ||||||||||| ||||||||| |
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|
| T |
12125456 |
caatgcaaagagtctcaataacaaacaaaatcagcaatatcctttttcttggctaacatgagaccttgataaattgcaaaaagt |
12125373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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