View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10737_low_6 (Length: 394)
Name: NF10737_low_6
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10737_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 55263099 - 55263469
Alignment:
| Q |
19 |
aagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgta |
118 |
Q |
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| T |
55263099 |
aagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgta |
55263198 |
T |
|
| Q |
119 |
ctgtaggacatgcaacaaa----aacatgtgtttctattaattgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaag |
214 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263199 |
ctgtaggacatgcaacaaattaaaacatgtgtttctatt----gtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaag |
55263294 |
T |
|
| Q |
215 |
gcatgaggaaacatcaccttgttctcaggattatcaaccttcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55263295 |
gcatgaggaaacatcaccttgttctcaggattatcaaccttcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagca |
55263394 |
T |
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| Q |
311 |
tcggttaataaaccacatttggtttaaataatgcataattaaatcatacataactcatcaaatacaattctctgcttct |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
55263395 |
tcggttaataaaccacatttggtttaaataatgcataattaaat----cataactcatcaaatacaattctctgattct |
55263469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 55269963 - 55270333
Alignment:
| Q |
19 |
aagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269963 |
aagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgta |
55270062 |
T |
|
| Q |
119 |
ctgtaggacatgcaacaaa----aacatgtgtttctattaattgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaag |
214 |
Q |
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|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270063 |
ctgtaggacatgcaacaaattaaaacatgtgtttctatt----gtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaag |
55270158 |
T |
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| Q |
215 |
gcatgaggaaacatcaccttgttctcaggattatcaaccttcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55270159 |
gcatgaggaaacatcaccttgttctcaggattatcaaccttcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagca |
55270258 |
T |
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| Q |
311 |
tcggttaataaaccacatttggtttaaataatgcataattaaatcatacataactcatcaaatacaattctctgcttct |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
55270259 |
tcggttaataaaccacatttggtttaaataatgcataattaaat----cataactcatcaaatacaattctctgattct |
55270333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 8301122 - 8301226
Alignment:
| Q |
19 |
aagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgta |
118 |
Q |
| |
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||||| ||||||| | |||||| ||||||||||| |||||||||| |||||||||| | | |||| ||||||| |||||||| ||||| | |||||| |
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| T |
8301122 |
aagcatttcccttggtgtattcagtgacaccatagttatatgtcagctccaacacaatggtctcgtgctcctctgcgtacccaagcatagctaaagtgta |
8301221 |
T |
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| Q |
119 |
ctgta |
123 |
Q |
| |
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||||| |
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| T |
8301222 |
ctgta |
8301226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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