View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10737_low_7 (Length: 360)

Name: NF10737_low_7
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10737_low_7
NF10737_low_7
[»] chr7 (1 HSPs)
chr7 (82-342)||(4488186-4488446)
[»] chr3 (3 HSPs)
chr3 (180-342)||(1409606-1409768)
chr3 (82-141)||(1409549-1409608)
chr3 (244-308)||(1402810-1402874)
[»] chr5 (2 HSPs)
chr5 (82-206)||(19023787-19023911)
chr5 (231-304)||(11955361-11955434)
[»] chr4 (1 HSPs)
chr4 (82-141)||(14244855-14244914)
[»] chr2 (1 HSPs)
chr2 (82-141)||(6355405-6355464)
[»] chr1 (1 HSPs)
chr1 (205-304)||(40682223-40682322)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 82 - 342
Target Start/End: Original strand, 4488186 - 4488446
Alignment:
Q  82 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 181  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488186 tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 4488285  T
Q  182 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4488286 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt 4488385  T
Q  282 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctata 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488386 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctata 4488446  T

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Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 1409606 - 1409768
Alignment:
Q  180 agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga 279  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  1409606 agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga 1409705  T
Q  280 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctata 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1409706 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctata 1409768  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
Q  82 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 141  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1409549 tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt 1409608  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
Q  244 tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct 308  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| || |||||||||||||    
T  1402810 tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct 1402874  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
Q  82 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 181  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19023787 tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag 19023886  T
Q  182 taccttttaaataagccacccattg 206  Q
    |||||||||||||||||||||||||    
T  19023887 taccttttaaataagccacccattg 19023911  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
Q  231 tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 304  Q
    |||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| ||  |||||||||    
T  11955361 tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc 11955434  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
Q  82 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 141  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14244855 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 14244914  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
Q  82 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 141  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6355405 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 6355464  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
Q  205 tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 304  Q
    ||||||||||| ||| | ||| |||||||||| |||   |||||||||||| | ||||  ||| |||||||||||||||||||||| ||| |||||||||    
T  40682322 tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc 40682223  T

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