View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10737_low_8 (Length: 352)

Name: NF10737_low_8
Description: NF10737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10737_low_8
NF10737_low_8
[»] scaffold0189 (1 HSPs)
scaffold0189 (13-338)||(513-838)
[»] scaffold0154 (2 HSPs)
scaffold0154 (13-338)||(14498-14823)
scaffold0154 (13-338)||(23918-24243)
[»] chr5 (1 HSPs)
chr5 (178-327)||(6221768-6221917)


Alignment Details
Target: scaffold0189 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 513 - 838
Alignment:
Q  13 gaaaacaggggaaaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaaacagtaaaccacggtgagcatgaatctccggcggatatt 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  513 gaaaacagggggaaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaatcagtaaaccacggtgagcatgaatctccggcggatata 612  T
Q  113 tgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcctggaatttggagaaagattcaaatatgtggtccttgttgcttcggattggta 212  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  613 tgggcacttgggtgtgcggtggtggagatggtaactggaaaaccagcatggaatttggagaaagattcaaatatgtggtcattgttgcttcggattggta 712  T
Q  213 ccggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaagagatggacggc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  713 ccggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggc 812  T
Q  313 tgagatgcttttgaatcatccttttg 338  Q
    ||||||||||||||||||||||||||    
T  813 tgagatgcttttgaatcatccttttg 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 14823 - 14498
Alignment:
Q  13 gaaaacaggggaaaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaaacagtaaaccacggtgagcatgaatctccggcggatatt 112  Q
    ||||||||||||||||||||||||  ||||||| ||||| || |||||||||||||||||| |||||||| | || |||||||||||||| |||||||||    
T  14823 gaaaacaggggaaaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctcccgcggatatt 14724  T
Q  113 tgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcctggaatttggagaaagattcaaatatgtggtccttgttgcttcggattggta 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  14723 tgggcacttgggtgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggtg 14624  T
Q  213 ccggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaagagatggacggc 312  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14623 ccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggc 14524  T
Q  313 tgagatgcttttgaatcatccttttg 338  Q
    ||||||||||||||||||||||||||    
T  14523 tgagatgcttttgaatcatccttttg 14498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 24243 - 23918
Alignment:
Q  13 gaaaacaggggaaaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaaacagtaaaccacggtgagcatgaatctccggcggatatt 112  Q
    ||||||||||||||||||||||||  ||||||| ||||| || |||||||||||||||||| |||||||| | || ||||||||||||||||||||||||    
T  24243 gaaaacaggggaaaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctccggcggatatt 24144  T
Q  113 tgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcctggaatttggagaaagattcaaatatgtggtccttgttgcttcggattggta 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  24143 tgggcacttgggtgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggtg 24044  T
Q  213 ccggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaagagatggacggc 312  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  24043 ccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatcgaagaaagagatggacggc 23944  T
Q  313 tgagatgcttttgaatcatccttttg 338  Q
    ||||||||||||||||||||||||||    
T  23943 tgagatgcttttgaatcatccttttg 23918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 327
Target Start/End: Complemental strand, 6221917 - 6221768
Alignment:
Q  178 ttcaaatatgtggtccttgttgcttcggattggtaccggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaag 277  Q
    ||||||||||||||| |||||  |||| |||||  | | ||| ||||| ||| |||| || || ||||| ||| |||  |||||||||||| | || |||    
T  6221917 ttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaag 6221818  T
Q  278 tgttttgtgaaagatccaagaaagagatggacggctgagatgcttttgaa 327  Q
    |||||  | || |||||   ||| ||||||||||| ||||||||||||||    
T  6221817 tgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaa 6221768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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