View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10738_low_13 (Length: 232)
Name: NF10738_low_13
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10738_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 3186037 - 3186243
Alignment:
| Q |
11 |
tgaagaagaaagaagttgagattataaatatgaaaatttattcatgtctttgagagggtttacaatttttctgtgcacaattgtttgagaggatttgcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3186037 |
tgaagaagaaagaagttgagattataaatatgaaaatttattcatgtctttgagagggtttacaatttttctgtgcacaattgtttgagaggatttgcta |
3186136 |
T |
|
| Q |
111 |
aattcttgtaaaaatttaaagttcagcaataaattattttgttgtgaaactgtgaatgtaagtatgatgtgctgaactacattaaattcgcattcttctg |
210 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3186137 |
aattcttgtaaaaattgaatgttcagcaataaattattttgttgtgaaactgtgaatgtaagtatgatgtgctgaactacattaaattcgcattcttatg |
3186236 |
T |
|
| Q |
211 |
ttgtgtg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
3186237 |
ttgtgtg |
3186243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University