View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10738_low_17 (Length: 216)
Name: NF10738_low_17
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10738_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 2369160 - 2369363
Alignment:
| Q |
1 |
aatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369160 |
aatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcga |
2369259 |
T |
|
| Q |
101 |
attgctatgaaattatgtgatctgtgtgctagctttataatac-------tttgtaatttgtctattttcaaactatgtaataatcctttcagatccatg |
193 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2369260 |
attgctatgaaattatgtgatctctgtgctagctttataatactttgtaatttgtaatttgtctattttcaaactatg---taatcctttcagatccatg |
2369356 |
T |
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| Q |
194 |
ttgtgtt |
200 |
Q |
| |
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||||||| |
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| T |
2369357 |
ttgtgtt |
2369363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2363414 - 2363533
Alignment:
| Q |
1 |
aatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2363414 |
aatccatcaagtgaacctattgatatgaatgaaacttttggattaagcaacaccaaaacaactcctcttgagattcttataaagccacgtttgtcttcga |
2363513 |
T |
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| Q |
101 |
attgctatgaaattatgtga |
120 |
Q |
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|||| ||||||||||||||| |
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| T |
2363514 |
attgttatgaaattatgtga |
2363533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 2307668 - 2307769
Alignment:
| Q |
20 |
ttgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtg |
119 |
Q |
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||||||||| |||| | ||||||||||| ||||| ||| | ||||||||| ||||||| ||||| |||| ||||||| ||||| |||||||| ||||| |
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| T |
2307668 |
ttgatatgagtgaatcctttggattaacaaacactaaagctactcctcttaagattctcattaaaccacatttgtctatcaattgttatgaaatcatgtg |
2307767 |
T |
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| Q |
120 |
at |
121 |
Q |
| |
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|| |
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| T |
2307768 |
at |
2307769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 2340349 - 2340450
Alignment:
| Q |
20 |
ttgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtg |
119 |
Q |
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||||||||| |||| | ||||||| ||| || ||||| | ||||| ||||||||||| ||||| |||||||||||| ||||| ||||| ||||||| |
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| T |
2340349 |
ttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattctcattaaaccacgtttgtctcacaattgttatgagtttatgtg |
2340448 |
T |
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| Q |
120 |
at |
121 |
Q |
| |
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|| |
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| T |
2340449 |
at |
2340450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 2351802 - 2351870
Alignment:
| Q |
20 |
ttgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccac |
88 |
Q |
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|||||||||||||| ||||||||| | ||||||||| | ||||| ||||||||||| ||||| |||| |
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| T |
2351802 |
ttgatatgactgaagaatttggattagcaaacaccaaagctactccacttgagattctcattaaaccac |
2351870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 4306123 - 4306284
Alignment:
| Q |
12 |
tgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaa |
111 |
Q |
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|||||||||||||||||||||| |||||||| | |||||| ||| ||||||| || ||||||||||||||||| |||||| |||| ||||| |||||| |
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| T |
4306123 |
tgaacctattgatatgactgaagcttttggaatcaccaaccacaaggcaactccactagagattcttattaagcctcgtttgccttctaattgttatgaa |
4306222 |
T |
|
| Q |
112 |
attatgtgatctgtgtgctagctttataatactttgtaatttgtctattttcaaactatgtaat |
175 |
Q |
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||| |||||| ||| |||||||| ||| || ||| ||||| ||||| ||||||||||||| |
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| T |
4306223 |
gctatatgatctttgtattagctttaaaatgctgtgt--tttgtgtatttccaaactatgtaat |
4306284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 5804143 - 5804059
Alignment:
| Q |
12 |
tgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtct |
96 |
Q |
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||||| |||||||||||||||| ||||||||||| || | |||| | ||||| ||||| ||||| ||||| |||||||||||| |
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| T |
5804143 |
tgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtct |
5804059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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