View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10738_low_18 (Length: 210)

Name: NF10738_low_18
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10738_low_18
NF10738_low_18
[»] chr7 (6 HSPs)
chr7 (22-196)||(26639535-26639710)
chr7 (128-177)||(1359978-1360027)
chr7 (133-177)||(22328185-22328230)
chr7 (54-104)||(23564936-23564986)
chr7 (136-177)||(5116929-5116970)
chr7 (59-107)||(23344221-23344269)
[»] chr3 (4 HSPs)
chr3 (128-177)||(1683798-1683847)
chr3 (136-174)||(5270705-5270743)
chr3 (128-177)||(20937981-20938030)
chr3 (1-49)||(2074999-2075047)
[»] chr4 (8 HSPs)
chr4 (128-177)||(33090192-33090241)
chr4 (133-177)||(3786297-3786341)
chr4 (128-177)||(34113112-34113161)
chr4 (2-51)||(34570331-34570381)
chr4 (54-106)||(6542052-6542104)
chr4 (122-177)||(35662758-35662814)
chr4 (133-177)||(38811000-38811044)
chr4 (128-177)||(41961722-41961773)
[»] chr6 (1 HSPs)
chr6 (133-177)||(4386860-4386904)
[»] chr1 (6 HSPs)
chr1 (133-177)||(41136143-41136187)
chr1 (132-177)||(12318318-12318363)
chr1 (128-177)||(22079627-22079676)
chr1 (54-107)||(927847-927900)
chr1 (136-177)||(6808781-6808823)
chr1 (131-172)||(2926832-2926873)
[»] chr8 (5 HSPs)
chr8 (133-176)||(15691120-15691163)
chr8 (121-177)||(10240430-10240486)
chr8 (2-107)||(32902052-32902152)
chr8 (133-177)||(3772524-3772569)
chr8 (128-173)||(40585940-40585985)
[»] scaffold0197 (1 HSPs)
scaffold0197 (121-175)||(1204-1258)
[»] chr5 (5 HSPs)
chr5 (128-177)||(8446015-8446064)
chr5 (133-177)||(317095-317138)
chr5 (126-175)||(33905821-33905870)
chr5 (133-177)||(4160919-4160963)
chr5 (133-177)||(10054610-10054654)
[»] chr2 (6 HSPs)
chr2 (70-107)||(12123456-12123493)
chr2 (128-176)||(30217843-30217891)
chr2 (122-174)||(42261290-42261342)
chr2 (128-177)||(40935421-40935470)
chr2 (2-49)||(4561280-4561327)
chr2 (133-161)||(7451451-7451479)
[»] scaffold0002 (1 HSPs)
scaffold0002 (122-174)||(490125-490177)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 26639535 - 26639710
Alignment:
Q  22 ttgtggttttacatt-gtttcttagattagaatttaggtctaggttttgttgttgttgttatttgaggttactttgatattggttacatagtaattcatt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26639535 ttgtggttttacatttgtttcttagattagaatttaggtctaggttttgttgttgttgttatttgaggttactttgatattggttacatactaattcatt 26639634  T
Q  121 tttgcttcacacatctaaatttcattgatgtgagatttggagttaccgaattcacaagaaggatggggtatgtatt 196  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26639635 tttgcttcacatatctaaattttattgatgtgagatttggagttaccgaattcacaagaaggatggggtatgtatt 26639710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 1360027 - 1359978
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  1360027 cacaaatctaaatttcattggtgtaagatttgaagttaccgaattcacaa 1359978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 22328230 - 22328185
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagtt-accgaattcacaa 177  Q
    ||||||||||||||||||||||||||||| || |||||||||||||    
T  22328230 atctaaatttcattgatgtgagatttggaattgaccgaattcacaa 22328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 23564986 - 23564936
Alignment:
Q  54 ttaggtctaggttttgttgttgttgttatttgaggttactttgatattggt 104  Q
    |||| ||||||||||||| ||||||||  ||| ||||||||||||||||||    
T  23564986 ttagatctaggttttgttattgttgttgcttgtggttactttgatattggt 23564936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 5116929 - 5116970
Alignment:
Q  136 taaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  5116929 taaatttcattgatgtgagatttaaagttactgaattcacaa 5116970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23344221 - 23344269
Alignment:
Q  59 tctaggttttgttgttgttgttatttgaggttactttgatattggttac 107  Q
    ||||||||||||| ||||||||  ||| |||||||| ||||||||||||    
T  23344221 tctaggttttgttattgttgttgcttgtggttacttggatattggttac 23344269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 1683798 - 1683847
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1683798 cacacatctaaatttcattgatgtgagatttagagttaccgaattcacaa 1683847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 5270705 - 5270743
Alignment:
Q  136 taaatttcattgatgtgagatttggagttaccgaattca 174  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  5270705 taaatttcattgatgtgagattttgagttaccgaattca 5270743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 20937981 - 20938030
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| |||||||||| | ||||||||||||||||||  ||||||||||||    
T  20937981 cacaaatctaaattttactgatgtgagatttggagtgtccgaattcacaa 20938030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2075047 - 2074999
Alignment:
Q  1 ctttatcttttgcttgtggttttgtggttttacattgtttcttagatta 49  Q
    |||||||||||||||||||||||||| ||||   ||||||| |||||||    
T  2075047 ctttatcttttgcttgtggttttgtgtttttcacttgtttcctagatta 2074999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 33090192 - 33090241
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  33090192 cacaaatcaaaatttcattgatgtgagatttggagttaccgaattcacaa 33090241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 3786297 - 3786341
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  3786297 atctaaatttcattgatgtgagatatggagttaccgaattcacaa 3786341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 34113112 - 34113161
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||||||    
T  34113112 cacacatctaaatttcattgatatgagaattagagttaccaaattcacaa 34113161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 34570381 - 34570331
Alignment:
Q  2 tttatcttttgcttgtggttttgtggtttt-acattgtttcttagattaga 51  Q
    ||||||||||||||||||||||||| |||| || ||| |||||||||||||    
T  34570381 tttatcttttgcttgtggttttgtgcttttcactttgattcttagattaga 34570331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 6542104 - 6542052
Alignment:
Q  54 ttaggtctaggttttgttgttgttgttatttgaggttactttgatattggtta 106  Q
    |||| ||||||||||||| ||||||||  ||| | ||||||||||||||||||    
T  6542104 ttagatctaggttttgttattgttgttgcttgtgattactttgatattggtta 6542052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 35662758 - 35662814
Alignment:
Q  122 ttgcttcacacatctaaatttcattgatgtgagatttggagtt-accgaattcacaa 177  Q
    ||||| |||| |||||||||||||||||||||  |||||| || |||||||||||||    
T  35662758 ttgctccacaaatctaaatttcattgatgtgaagtttggaattgaccgaattcacaa 35662814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 38811044 - 38811000
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    ||||||||||||||| | ||||||||| ||||||| |||||||||    
T  38811044 atctaaatttcattggtttgagatttgaagttaccaaattcacaa 38811000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 41961722 - 41961773
Alignment:
Q  128 cacacatctaaatttcattga--tgtgagatttggagttaccgaattcacaa 177  Q
    |||| ||||||||||||||||  |||||| ||||||||||||||| ||||||    
T  41961722 cacagatctaaatttcattgatgtgtgagttttggagttaccgaactcacaa 41961773  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 4386860 - 4386904
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  4386860 atctaaatttcattgatgtgagatttggagttaccaaattcacaa 4386904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 41136143 - 41136187
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  41136143 atctaaatttcattgatgtgagatttggagttaccgaatttacaa 41136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 12318363 - 12318318
Alignment:
Q  132 catctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||    
T  12318363 catccaaatttcattgatgtgagatttggagctaccgaattcacaa 12318318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 22079627 - 22079676
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  22079627 cacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 22079676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 927900 - 927847
Alignment:
Q  54 ttaggtctaggttttgttgttgttgttatttgaggttactttgatattggttac 107  Q
    |||| |||| ||||||||||||||||| |||| | |||||||||||||||||||    
T  927900 ttagatctaagttttgttgttgttgttgtttgtgattactttgatattggttac 927847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 6808781 - 6808823
Alignment:
Q  136 taaatttcattgatgtgagatttggagtta-ccgaattcacaa 177  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  6808781 taaatttcattgatgtgagattttgagttacccgaattcacaa 6808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 2926832 - 2926873
Alignment:
Q  131 acatctaaatttcattgatgtgagatttggagttaccgaatt 172  Q
    |||||||||||||| |||||||||||||| |||||| |||||    
T  2926832 acatctaaatttcactgatgtgagatttgaagttactgaatt 2926873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 15691120 - 15691163
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcaca 176  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  15691120 atctaaatttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 10240430 - 10240486
Alignment:
Q  121 tttgcttcacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||| |||| || |||||| ||||||||||| |||||||||||||||||||||||    
T  10240430 tttgctccacaaatttaaattacattgatgtgaaatttggagttaccgaattcacaa 10240486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 32902152 - 32902052
Alignment:
Q  2 tttatcttttgcttgtggttttgtggttttacattgtttcttagattagaatttaggtctaggttt--tgttgttgttgttatttgaggttactttgata 99  Q
    |||||||||||||| |||||||||| ||||   ||| ||| |||||||||       |||||||||  ||||||||||||| ||||||||| ||||||||    
T  32902152 tttatcttttgcttttggttttgtgtttttcacttggttcctagattaga-------tctaggtttgttgttgttgttgttgtttgaggttgctttgata 32902060  T
Q  100 ttggttac 107  Q
    || |||||    
T  32902059 ttagttac 32902052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 3772524 - 3772569
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagtt-accgaattcacaa 177  Q
    |||||||||||||||||||||| |||||| || |||||||||||||    
T  3772524 atctaaatttcattgatgtgaggtttggaattgaccgaattcacaa 3772569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 40585940 - 40585985
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattc 173  Q
    ||||||||||||||||||||| |||||||||  ||||||| |||||    
T  40585940 cacacatctaaatttcattgacgtgagatttaaagttacccaattc 40585985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 1258 - 1204
Alignment:
Q  121 tttgcttcacacatctaaatttcattgatgtgagatttggagttaccgaattcac 175  Q
    ||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||    
T  1258 tttgcttcacaaatcttaatttcattgatttgagatttggagtttccgaattcac 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 8446015 - 8446064
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||| |||||||||||||||||||| |||||| |||||||||||| ||||    
T  8446015 cacaaatctaaatttcattgatgtgggatttgtagttaccgaatttacaa 8446064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 317095 - 317138
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  317095 atctaaatttcattgatgtgagatttggagtttcc-aattcacaa 317138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 33905870 - 33905821
Alignment:
Q  126 ttcacacatctaaatttcattgatgtgagatttggagttaccgaattcac 175  Q
    |||||| |||||||||| |||| ||||||||||||||||  |||||||||    
T  33905870 ttcacaaatctaaatttaattggtgtgagatttggagttgtcgaattcac 33905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 4160919 - 4160963
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    |||||||||  |||||||||||||||||||||||| |||| ||||    
T  4160919 atctaaattatattgatgtgagatttggagttaccaaatttacaa 4160963  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 10054654 - 10054610
Alignment:
Q  133 atctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    ||||||||||||||||| ||||||||  |||||||||||| ||||    
T  10054654 atctaaatttcattgatatgagatttaaagttaccgaatttacaa 10054610  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 12123493 - 12123456
Alignment:
Q  70 ttgttgttgttatttgaggttactttgatattggttac 107  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  12123493 ttgttgttgttgtttgaggttactttgatattggttac 12123456  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 30217891 - 30217843
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcaca 176  Q
    |||| ||||||||| ||||||||||||||||| | ||||||||||||||    
T  30217891 cacaaatctaaattccattgatgtgagatttgaaattaccgaattcaca 30217843  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 42261342 - 42261290
Alignment:
Q  122 ttgcttcacacatctaaatttcattgatgtgagatttggagttaccgaattca 174  Q
    ||||| |||| |||||||||||||||| |||||||| | ||||||||||||||    
T  42261342 ttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattca 42261290  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 40935470 - 40935421
Alignment:
Q  128 cacacatctaaatttcattgatgtgagatttggagttaccgaattcacaa 177  Q
    ||||||||||| ||| |||| ||||| |||| ||||||||||||||||||    
T  40935470 cacacatctaacttttattggtgtgacatttcgagttaccgaattcacaa 40935421  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 4561280 - 4561327
Alignment:
Q  2 tttatcttttgcttgtggttttgtggttttaca-ttgtttcttagatta 49  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  4561280 tttatcttttgcttgtggttttgt-gttttacacttggttcttagatta 4561327  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 7451451 - 7451479
Alignment:
Q  133 atctaaatttcattgatgtgagatttgga 161  Q
    |||||||||||||||||||||||||||||    
T  7451451 atctaaatttcattgatgtgagatttgga 7451479  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 490177 - 490125
Alignment:
Q  122 ttgcttcacacatctaaatttcattgatgtgagatttggagttaccgaattca 174  Q
    ||||| |||| |||||||||||||||| |||||||| | ||||||||||||||    
T  490177 ttgctccacaaatctaaatttcattgacgtgagattagaagttaccgaattca 490125  T

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