View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10738_low_2 (Length: 410)

Name: NF10738_low_2
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10738_low_2
NF10738_low_2
[»] chr1 (7 HSPs)
chr1 (17-254)||(32447431-32447668)
chr1 (121-248)||(17118186-17118313)
chr1 (332-396)||(32447289-32447353)
chr1 (154-197)||(27632571-27632614)
chr1 (154-204)||(45594273-45594323)
chr1 (154-188)||(49848562-49848596)
chr1 (151-188)||(38720072-38720109)
[»] chr8 (1 HSPs)
chr8 (148-187)||(39916903-39916942)
[»] chr7 (2 HSPs)
chr7 (154-204)||(28944878-28944928)
chr7 (151-191)||(13297808-13297848)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 32447668 - 32447431
Alignment:
Q  17 acttacatgtttcttgtattagacacgtgacactttatccagacccgtgttgcgttgcgacacgggttaatgcttctagttgattattactaaatataaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32447668 acttacatgtttcttgtattagacacgtgacactttatccagacccgtgttgcgttgcgacacgggttaatgcttctagttgattattactaaatataaa 32447569  T
Q  117 acaattcaggtggtcaacaattgcgagaagcttgccgggaagaacagacaatgagataaagaactattggaggactcatttcaagaaaaagaacaaaaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32447568 acaattcaggtggtcaacaattgcgagaagcttgccgggaagaacagacaatgagataaagaactattggaggactcatttcaagaaaaagaacaaaaac 32447469  T
Q  217 cccactgatgctgctgaaaaggcgaaaaaccgttattt 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32447468 cccactgatgctgctgaaaaggcgaaaaaccgttattt 32447431  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 17118313 - 17118186
Alignment:
Q  121 ttcaggtggtcaacaattgcgagaagcttgccgggaagaacagacaatgagataaagaactattggaggactcatttcaagaaaaagaacaaaaacccca 220  Q
    |||||||||||||||||||| ||||| || || ||||||||||||||||| |||||||| || |||||||||||||||||||||||    ||||| |||     
T  17118313 ttcaggtggtcaacaattgcaagaagtttaccaggaagaacagacaatgaaataaagaattactggaggactcatttcaagaaaaaagcaaaaaatccct 17118214  T
Q  221 ctgatgctgctgaaaaggcgaaaaaccg 248  Q
     ||||||||| |||||||||||||||||    
T  17118213 ttgatgctgccgaaaaggcgaaaaaccg 17118186  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 32447353 - 32447289
Alignment:
Q  332 tggacatgaaagggatcatagacttgttgcttgaggaaaatgagtactgtactagtgtaccttct 396  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32447353 tggacatgaaagggatcatagacttgttgcttgaggaaaatgactactgtactagtgtaccttct 32447289  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 27632614 - 27632571
Alignment:
Q  154 ggaagaacagacaatgagataaagaactattggaggactcattt 197  Q
    ||||||||||||||||| || |||||||||||||| ||||||||    
T  27632614 ggaagaacagacaatgaaatcaagaactattggagaactcattt 27632571  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 45594323 - 45594273
Alignment:
Q  154 ggaagaacagacaatgagataaagaactattggaggactcatttcaagaaa 204  Q
    |||||||||||||||||||| |||||||||||||  || ||||| ||||||    
T  45594323 ggaagaacagacaatgagattaagaactattggaacacccatttaaagaaa 45594273  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 49848596 - 49848562
Alignment:
Q  154 ggaagaacagacaatgagataaagaactattggag 188  Q
    ||||||||||| |||||||||||||||||||||||    
T  49848596 ggaagaacagataatgagataaagaactattggag 49848562  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 38720072 - 38720109
Alignment:
Q  151 ccgggaagaacagacaatgagataaagaactattggag 188  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  38720072 ccgggaagaaccgacaatgaaataaagaactattggag 38720109  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 39916903 - 39916942
Alignment:
Q  148 ttgccgggaagaacagacaatgagataaagaactattgga 187  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  39916903 ttgcccggaagaacagacaatgagatcaagaactattgga 39916942  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 28944928 - 28944878
Alignment:
Q  154 ggaagaacagacaatgagataaagaactattggaggactcatttcaagaaa 204  Q
    |||||||||||||||||||||||||||| |||||  || ||||| ||||||    
T  28944928 ggaagaacagacaatgagataaagaacttttggaacacacatttgaagaaa 28944878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 13297808 - 13297848
Alignment:
Q  151 ccgggaagaacagacaatgagataaagaactattggaggac 191  Q
    ||||||||||| || ||||||||||||||||| ||||||||    
T  13297808 ccgggaagaaccgataatgagataaagaactactggaggac 13297848  T

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