View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10738_low_3 (Length: 376)

Name: NF10738_low_3
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10738_low_3
NF10738_low_3
[»] chr2 (15 HSPs)
chr2 (116-357)||(31371162-31371403)
chr2 (128-357)||(31278397-31278627)
chr2 (176-357)||(31381733-31381915)
chr2 (136-357)||(31250839-31251061)
chr2 (211-357)||(31353171-31353317)
chr2 (142-357)||(31241917-31242133)
chr2 (205-353)||(31288074-31288222)
chr2 (199-357)||(31302408-31302566)
chr2 (209-357)||(31313155-31313303)
chr2 (213-353)||(31229529-31229669)
chr2 (258-353)||(31188089-31188184)
chr2 (258-353)||(31196145-31196240)
chr2 (258-353)||(31214757-31214852)
chr2 (274-353)||(31176810-31176889)
chr2 (262-357)||(31463526-31463621)
[»] chr8 (3 HSPs)
chr8 (261-357)||(21002299-21002395)
chr8 (273-357)||(19874974-19875058)
chr8 (261-357)||(21008972-21009068)
[»] chr5 (1 HSPs)
chr5 (283-353)||(36209851-36209921)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 116 - 357
Target Start/End: Original strand, 31371162 - 31371403
Alignment:
Q  116 atgaaaaagaacaacagtatatgtatgacaaaaaatgaagtgtaagtagaaagtaaaatcgataatcaaaattacatgttcaatgagaacataaaaaagt 215  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31371162 atgaaaaagaacgacaatatatgtatgacaaaaaatgaagtgtaagtagaaagtaaaatcgataatcaaaattacatgttcaatgagaacataaaaaagt 31371261  T
Q  216 tacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaaca 315  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31371262 tacccattccagaagatagaatgcttcctccattgaccgatacatgatgttgctctttccactaacaatttccaaagcaacaattccgaaactataaaca 31371361  T
Q  316 tctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31371362 tctgctttgtctgtcaaataaccatgcattgcatattcagga 31371403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 128 - 357
Target Start/End: Original strand, 31278397 - 31278627
Alignment:
Q  128 aacagtatatgtatgacaaaaaatgaagtgtaagtagaaagtaaaatcgataatcaaaattacatgttcaatg-agaacataaaaaagttacccattcca 226  Q
    |||| |||||||| |||| ||||| ||||||||||||| |||   |  |||||||||| ||||||| |||||| |||||| | || |||||||||||| |    
T  31278397 aacaatatatgtacgacagaaaatcaagtgtaagtagatagtgccacagataatcaaatttacatgatcaatggagaacaaagaatagttacccattcaa 31278496  T
Q  227 gaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtc 326  Q
    |||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31278497 gaagatagaatgcttcctcctttaaccgatacatggtgttgctccttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtc 31278596  T
Q  327 tgtcaaataaccatgcattgcatattcagga 357  Q
    |||||||||||||||||||||||||||||||    
T  31278597 tgtcaaataaccatgcattgcatattcagga 31278627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 176 - 357
Target Start/End: Original strand, 31381733 - 31381915
Alignment:
Q  176 gataatcaaaattacatgttcaatg-agaacataaaaaagttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttc 274  Q
    |||||||||| ||| ||| |||||| ||||||||||||| ||||||| || ||||||||||||| ||| ||| ||||||||||||||||||||||| |||    
T  31381733 gataatcaaatttagatgatcaatggagaacataaaaaaattacccaatctagaagatagaatgcttcttcctttgaccgatacatggtgttgctccttc 31381832  T
Q  275 cactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31381833 cactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccacgcattgcatattcagga 31381915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 31250839 - 31251061
Alignment:
Q  136 atgtatgacaaaaaatgaagtgtaagtagaaagtaaaatcgataatcaaaattacatgttcaat-gagaacataaaaaagttacccattccagaagatag 234  Q
    |||| ||||| |||| |||||| ||||||| |||| ||| |||||||| | |||||||   ||| || ||||| ||||||||||||| || |||||||||    
T  31250839 atgtgtgacacaaaacgaagtgcaagtagatagtacaatggataatcagatttacatgactaattgacaacattaaaaagttacccaatcaagaagatag 31250938  T
Q  235 aatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaat 334  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  31250939 aatgcttcctcctttgaccgatacatggtgttgctctttccactaacgatttccaaagcaacaattccaaaactataaacatctgctttatccgtcaaat 31251038  T
Q  335 aaccatgcattgcatattcagga 357  Q
    |||||||||||||||||||||||    
T  31251039 aaccatgcattgcatattcagga 31251061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 211 - 357
Target Start/End: Original strand, 31353171 - 31353317
Alignment:
Q  211 aaagttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactat 310  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| | |||||||| ||||||||||| |||||||    
T  31353171 aaagttacccattccagaagagagaatgcttcctcctttgaccgatacatggtgttgctctttccgctagcgatttccaaggcaacaattccaaaactat 31353270  T
Q  311 aaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31353271 aaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 31353317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 142 - 357
Target Start/End: Original strand, 31241917 - 31242133
Alignment:
Q  142 gacaaaaaatgaagtgtaagtagaaagtaaaatcgataatcaaaattacatgttcaatg-agaacataaaaaagttacccattccagaagatagaatgat 240  Q
    |||| |||| ||| |||||||||| |||   || |||||||||| ||||||| |||||| |||||||| || |||||||||||| ||||||  ||||| |    
T  31241917 gacacaaaacgaaatgtaagtagatagtgtcatggataatcaaatttacatggtcaatggagaacatagaatagttacccattctagaagaaggaatgct 31242016  T
Q  241 tcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccat 340  Q
    |||||| ||||  ||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  31242017 tcctcctttgattgatacatggtgttgctccttccactaacgatttccaaggcaacaattccaaaactataaacatcagctttgtctgtcaaataaccat 31242116  T
Q  341 gcattgcatattcagga 357  Q
    |||||||||||||||||    
T  31242117 gcattgcatattcagga 31242133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 205 - 353
Target Start/End: Original strand, 31288074 - 31288222
Alignment:
Q  205 cataaaaaagttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccga 304  Q
    |||||||  ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  31288074 cataaaattgttacccattctagaagatagaatgcttcctcctttgaccgatacatggtgttgctcctcccactaacaatttccaaagcaacaattccga 31288173  T
Q  305 aactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  31288174 aactataaacatctgctttgtctgtcaatttaccatgcattgcatattc 31288222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 31302408 - 31302566
Alignment:
Q  199 tgagaacataaaaaagttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaa 298  Q
    |||||||| |||||||||||||| || ||||||||||| | || |||| |||||||||||| ||||||||||||||||||||| ||||| || |||||||    
T  31302408 tgagaacaaaaaaaagttacccaatcaagaagatagaacgcttgctcctttgaccgatacaaggtgttgctctttccactaacgatttctaaggcaacaa 31302507  T
Q  299 ttccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  31302508 ttccaaaactataaacatctgctttgtccgtcaaataaccatgcattgcgtattcagga 31302566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 31313155 - 31313303
Alignment:
Q  209 aaaaagttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaact 308  Q
    ||||| ||||||| || ||||||||||||| ||||||| ||| |||||  |||||||| ||| |||| || ||||||||||| ||||||||||| |||||    
T  31313155 aaaaatttacccaatcaagaagatagaatgcttcctcctttgtccgatgaatggtgtttctccttccgctgacaatttccaaggcaacaattccaaaact 31313254  T
Q  309 ataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||| |  |  || |||||||||||||||||||||| |||||||||    
T  31313255 ataaacaccgtccctgactgtcaaataaccatgcattgcgtattcagga 31313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 31229529 - 31229669
Alignment:
Q  213 agttacccattccagaagatagaatgattcctccattgaccgatacatggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataa 312  Q
    ||||||||| || | |||| ||||  |||| ||| ||| || || ||||||||||  ||| ||||||||||||||||| ||||||| ||| |||||||||    
T  31229529 agttacccaatcaacaagagagaagcattcatcccttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataa 31229628  T
Q  313 acatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    ||||| ||||| || |||||||| || ||||||||||||||    
T  31229629 acatccgctttctccgtcaaatatccgtgcattgcatattc 31229669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 31188089 - 31188184
Alignment:
Q  258 catggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    ||||||||||  ||| ||||||||||||||||| ||||| | ||| ||||||||||||||  |||| || |||||||| || ||||||||||||||    
T  31188089 catggtgttgtgcttcccactaacaatttccaaggcaacgactccaaaactataaacatccactttctccgtcaaatatccgtgcattgcatattc 31188184  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 31196145 - 31196240
Alignment:
Q  258 catggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    ||||||||||  ||| ||||||||||||||||| ||||| | ||| ||||||||||||||  |||| || |||||||| || ||||||||||||||    
T  31196145 catggtgttgtgcttcccactaacaatttccaaggcaactactccaaaactataaacatccactttctccgtcaaatatccgtgcattgcatattc 31196240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 31214757 - 31214852
Alignment:
Q  258 catggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    ||||||||||  ||| ||||||||||||||||| ||||| | ||| ||||||||||||||  |||| || |||||||| || ||||||||||||||    
T  31214757 catggtgttgtgcttcccactaacaatttccaaggcaactactccaaaactataaacatccactttctccgtcaaatatccgtgcattgcatattc 31214852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 31176810 - 31176889
Alignment:
Q  274 ccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    ||||||||||||||||| ||||| | ||| ||||||||||||||  |||| || |||||||| || ||||||||||||||    
T  31176810 ccactaacaatttccaaggcaacgactccaaaactataaacatccactttctccgtcaaatatccgtgcattgcatattc 31176889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 31463621 - 31463526
Alignment:
Q  262 gtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||||| ||||||||||||| || ||||| ||||  ||||| ||||| ||||| |||||||| ||||| |||||  |||| ||||| ||||||    
T  31463621 gtgttgctcattccactaacaatctctaaagctacaaccccgaagctatagacatcggctttgtcagtcaagtaaccccgcatagcatactcagga 31463526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 21002395 - 21002299
Alignment:
Q  261 ggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||| | ||||| || |||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21002395 ggtgttgttgtttccgcttacaatttccaatataacaattccaaaactataaacatctgctttgtctgtcaaataaccatgcatagcatactcagga 21002299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 19874974 - 19875058
Alignment:
Q  273 tccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||| |||||||||||  |||| ||||||    
T  19874974 tccactaacaatttccaatataacaattccaaaactataaacatctgccttgtctgtcaagtaaccatgcatatcatactcagga 19875058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 21008972 - 21009068
Alignment:
Q  261 ggtgttgctctttccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcagga 357  Q
    ||||||| | ||||| || |||||||||||   ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||    
T  21008972 ggtgttgttgtttccgcttacaatttccaatataacaattccaaaactataaacatctgccttgtctgtcaagtaaccatgcatagcatactcagga 21009068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 36209851 - 36209921
Alignment:
Q  283 atttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattc 353  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  36209851 atttccaatgcaacaattccaaaactataaacatctgctttgtcggtcaaataaccatgcatggcatattc 36209921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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