View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10738_low_6 (Length: 295)
Name: NF10738_low_6
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10738_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 276
Target Start/End: Original strand, 6854131 - 6854344
Alignment:
| Q |
63 |
atcaataccaaataaaaatgcataaaggtgatagacataattgttgaatagtataagaaagtatattagaatatcttgacgttatcatagcttatctaat |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854131 |
atcaataccaaataaaaatgcataaaggtgatagaaataattgttgaatggtataagaaagtatattagaatatcttgacgttatcatagcttatctaat |
6854230 |
T |
|
| Q |
163 |
aagaatagtttctaatcttgaaatatctttgattgtttcctaaggattagtttattctaatgctcagtagtgtgcctgaggaactagaatatatgtaaca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854231 |
aagaatagtttctaatcttgaaatatctttgattgtttcctaaggattagtttattctaatgcccagtagtgtgcctgaggaactagaatatatgtaaca |
6854330 |
T |
|
| Q |
263 |
tcctagttcctagg |
276 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6854331 |
tcctagttcctagg |
6854344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University