View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10738_low_7 (Length: 289)
Name: NF10738_low_7
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10738_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 6147027 - 6146760
Alignment:
| Q |
15 |
tcatgaagtgttcttcttcctagccatatatttaatatcaataggaacaggaggacacaaaccttctttagagagttttggagctgatcaatttgatgat |
114 |
Q |
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| T |
6147027 |
tcatgaagtgttcttcttcctagccatatatttaatatcaataggaacaggaggacacaaaccttctttagagagttttggagctgatcaatttgatgat |
6146928 |
T |
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| Q |
115 |
aatcatattgaagaaagaaggcaaaaaatgtcatttttcaattggtggaattgtggactttgtagtggactcattcttggtgtgacattaattgtttatg |
214 |
Q |
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| T |
6146927 |
aatcatattgaagaaagaaggcaaaaaatgtcatttttcaattggtggaattgtggactttgtagtggactcattcttggtgtgacattaattgtttatg |
6146828 |
T |
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| Q |
215 |
tacaagatcatgtgaattggggtgttgctgatattattctcacatgtgttatgactttctctctgctt |
282 |
Q |
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| T |
6146827 |
tacaagatcatgtgaattggggtgttgctgatattattctcacatgtgttatgactttctctttgctt |
6146760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 23694144 - 23693902
Alignment:
| Q |
15 |
tcatgaagtgttcttcttcctagccatatatttaatatcaataggaacaggaggacacaaaccttctttagagagttttggagctgatcaatttgatgat |
114 |
Q |
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| T |
23694144 |
tcatgaagtggttttcttcctagctatctacttaatatcaatagcaactggaggccacaaaccttccttggaaagctttggagctgaccaatttgatgag |
23694045 |
T |
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| Q |
115 |
aatcatattgaagaaagaaggcaaaaaatgtcatttttcaattggtggaattgtggactttgtagtggactcattcttggtgtgacattaattgtttatg |
214 |
Q |
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| T |
23694044 |
gatcatgttgaagaaaggaaacaaaaaatgtcctttttcaattggtggaattgtgctctatgtagtggacttattctaggagtgacccttattgtttata |
23693945 |
T |
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| Q |
215 |
tacaagatcatgtgaattggggtgttgctgatattattctcac |
257 |
Q |
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| T |
23693944 |
tacaagataacataaattggggtgctgctgatattattttcac |
23693902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 31065423 - 31065323
Alignment:
| Q |
64 |
ggaggacacaaaccttctttagagagttttggagctgatcaatttgatgataatcatattgaagaaagaaggcaaaaaatgtcatttttcaattggtgga |
163 |
Q |
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|||||||||||||| | || || || ||||||||||||||||||||||| |||| | |||||||| | | | |||||||| || ||||| ||||||| |
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| T |
31065423 |
ggaggacacaaaccatgcttggaaagctttggagctgatcaatttgatgaagatcacgtcgaagaaaggaagaagaaaatgtctttcttcaactggtgga |
31065324 |
T |
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| Q |
164 |
a |
164 |
Q |
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| T |
31065323 |
a |
31065323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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