View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10738_low_8 (Length: 264)
Name: NF10738_low_8
Description: NF10738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10738_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 28298273 - 28298115
Alignment:
| Q |
88 |
tattgatatatttgttttctacaaatttatattttatctctgttcaactcatcannnnnnngagaaaatctatgttcaaaacatcaatgttacaagtttt |
187 |
Q |
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| T |
28298273 |
tattgatatatttgttttctacaaatttatattttatctctgttcaacacatcatttttttgagaaaatctatgttcaaaacatcaatgttataagtttt |
28298174 |
T |
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| Q |
188 |
tagaaaaatcacaagctgtaattacagtcttacccatgtaacttggataggggggaatg |
246 |
Q |
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| T |
28298173 |
tagaaaaatcacaagctgcaattacagtcttacccatgtaacttgcataggggggaatg |
28298115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 28298349 - 28298311
Alignment:
| Q |
12 |
acagaccaacatgttacaatttgtagccggccggcacat |
50 |
Q |
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| T |
28298349 |
acagaccaacatgttacaatttgtagccggccggcacat |
28298311 |
T |
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