View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_high_12 (Length: 306)
Name: NF10739_high_12
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 6798022 - 6797745
Alignment:
| Q |
14 |
agaccagtcataaatgtcggcagggggagcaggcaatggtcctgatgctgaggaacgagagtttgaatagtgcagcacagaagttgtgctgagaacagtt |
113 |
Q |
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| T |
6798022 |
agaccagtcataattgtcggcagggggagcaggcaagggtcctgatgctgaggaacgagagtttgaatagtgcagcacagaagttgtgctgagaacagtt |
6797923 |
T |
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| Q |
114 |
tgagtaaatcttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaat |
213 |
Q |
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| T |
6797922 |
tgagtaaatcttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaat |
6797823 |
T |
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| Q |
214 |
catatatgttttggagagtatgtgatccttcaacctcgactagttttagcgtatgaccctgaattttaaagttgattg |
291 |
Q |
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| T |
6797822 |
catatacgttttggagagtatgtgatccttcaacctcgactagttttagtgtatgaccctgaattctaaagttgattg |
6797745 |
T |
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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 33845321 - 33845460
Alignment:
| Q |
123 |
cttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaatcatatatgt |
222 |
Q |
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|||||||| |||||||||||||||||||| |||| ||| |||||||| || || |||| | ||||||| |||||||| |||||||| || |||||||||| |
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| T |
33845321 |
cttgttgaagcaacaatgtaatagtccttaggagattggtttaaggttaccaaaacagcagctgattgcccaacatggacatcaagggagtcatatatgt |
33845420 |
T |
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| Q |
223 |
tttggagagtatgtgatccttcaacctcgactagttttag |
262 |
Q |
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| T |
33845421 |
tttggataacatgtgacccttccacctcaactagttttag |
33845460 |
T |
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