View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_high_2 (Length: 478)
Name: NF10739_high_2
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 42336149 - 42335689
Alignment:
| Q |
1 |
aacagaagacatcagtcctgggattccggacgttagaccagagatgccaaagaccactactcaaagcacaaactcagctctatgtttgaccaaagtaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336149 |
aacagaagacatcagtcctgggattccggacgttagaccagagatgccaaagaccactactcaaagcacaaactcagctctatgtttgaccaaagtaaac |
42336050 |
T |
|
| Q |
101 |
aaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctcaaccataatttgtgtattaactcttaccaactcaacatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336049 |
aaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctcaaccataatttgtgtattaactcttaccaactcaacatac |
42335950 |
T |
|
| Q |
201 |
ataaactgaaatattccttatacgcactcttgtgcttgcttgactcaaaggaagaatcccaactgggaatnnnnnnngtaagaatatggaaccttctaca |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
42335949 |
ataaactgaaatattccttatacacactcttgtgcttgattgactcaaaggaagaatcccaactggtaataaaaaaagcaagaatatggaaccttctaca |
42335850 |
T |
|
| Q |
301 |
tcttcagaaaagcagccaccaaaaggaagagttttgaaggagaagagagcaaagttttacattattcgaagatgcatagtcatgcttctctgttggaagg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335849 |
tcttcagaaaagcagctaccaaaaggaagagttttgaaggagaagagagcaaagttttacattattcgaagatgcatagtcatgcttctctgttggaagg |
42335750 |
T |
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| Q |
401 |
ataaaggagacaaggaataataccggtaaaacactcgctcacttcaaagaacactgtttct |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42335749 |
ataaaggagacaaggaataataccggtaaaacactcactcacttcaaagaacactgtttct |
42335689 |
T |
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