View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10739_high_20 (Length: 257)

Name: NF10739_high_20
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10739_high_20
NF10739_high_20
[»] chr5 (19 HSPs)
chr5 (72-254)||(40786597-40786781)
chr5 (127-198)||(24228363-24228434)
chr5 (5-73)||(40786801-40786866)
chr5 (127-198)||(24213370-24213441)
chr5 (77-127)||(24228292-24228342)
chr5 (132-215)||(35074208-35074292)
chr5 (72-127)||(24213294-24213349)
chr5 (126-219)||(16633354-16633446)
chr5 (11-73)||(24213214-24213273)
chr5 (4-73)||(32928939-32929005)
chr5 (178-224)||(21575048-21575094)
chr5 (178-219)||(17604690-17604731)
chr5 (127-219)||(35105030-35105122)
chr5 (4-73)||(29742053-29742119)
chr5 (134-196)||(19479552-19479614)
chr5 (45-73)||(24228239-24228267)
chr5 (192-239)||(25214564-25214609)
chr5 (192-239)||(25278714-25278759)
chr5 (79-127)||(31109011-31109058)
[»] chr3 (10 HSPs)
chr3 (127-238)||(20463207-20463318)
chr3 (127-238)||(20458842-20458952)
chr3 (127-198)||(13639624-13639695)
chr3 (133-238)||(20459075-20459180)
chr3 (127-219)||(7642305-7642396)
chr3 (127-219)||(21587214-21587306)
chr3 (132-219)||(44122085-44122172)
chr3 (17-73)||(38419988-38420041)
chr3 (78-127)||(13639716-13639765)
chr3 (81-121)||(20458775-20458815)
[»] chr8 (3 HSPs)
chr8 (133-238)||(29185623-29185726)
chr8 (4-73)||(22274915-22274981)
chr8 (73-120)||(29185542-29185589)
[»] chr2 (7 HSPs)
chr2 (127-198)||(25232018-25232089)
chr2 (132-198)||(25225713-25225779)
chr2 (134-219)||(19912279-19912364)
chr2 (126-215)||(45276354-45276443)
chr2 (4-73)||(7394657-7394723)
chr2 (73-120)||(25232117-25232164)
chr2 (72-118)||(25225814-25225860)
[»] chr6 (1 HSPs)
chr6 (127-198)||(19441220-19441291)
[»] chr1 (15 HSPs)
chr1 (127-198)||(18640580-18640650)
chr1 (127-198)||(29547775-29547846)
chr1 (127-218)||(28201725-28201817)
chr1 (11-73)||(27417327-27417390)
chr1 (127-198)||(29530120-29530191)
chr1 (137-215)||(32808782-32808859)
chr1 (5-73)||(36686843-36686908)
chr1 (127-219)||(11444112-11444204)
chr1 (132-193)||(18643285-18643346)
chr1 (72-120)||(11444036-11444084)
chr1 (8-73)||(11443954-11444016)
chr1 (79-114)||(18643228-18643263)
chr1 (72-121)||(11441667-11441716)
chr1 (11-73)||(11441588-11441647)
chr1 (79-127)||(15552979-15553026)
[»] scaffold0066 (1 HSPs)
scaffold0066 (11-73)||(11794-11853)
[»] chr4 (11 HSPs)
chr4 (126-198)||(26654461-26654533)
chr4 (4-73)||(12753598-12753664)
chr4 (11-47)||(28874334-28874370)
chr4 (4-73)||(17350010-17350076)
chr4 (181-219)||(5350929-5350967)
chr4 (135-216)||(18902153-18902234)
chr4 (132-217)||(51700361-51700446)
chr4 (127-239)||(56341873-56341983)
chr4 (130-198)||(7895117-7895185)
chr4 (127-219)||(12746623-12746715)
chr4 (11-47)||(46694139-46694174)
[»] chr7 (5 HSPs)
chr7 (127-219)||(7578536-7578628)
chr7 (144-219)||(35339066-35339141)
chr7 (11-73)||(42939966-42940025)
chr7 (127-198)||(42129528-42129599)
chr7 (178-219)||(14719460-14719501)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 40786781 - 40786597
Alignment:
Q  72 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatagatcctaagtaaatgatcaaaccaattaaggaccacta--accatacattt 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||  |||||||||||    
T  40786781 aagagtgtattgtattacttcacaagtgtgttctttacattacaatataggtcctaagtgaatgatcaaatcaattaaggaccactataaccatacattt 40786682  T
Q  170 actactgagggttataggaaggtggaagaccaagaatggacatccactaacttataattattcataacatgtagtaagtagttga 254  Q
    |||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40786681 actaatgggggttataggaaggtggaagaccaagaatgaacatccactaacttataattattcataacatgtagtaagtagttga 40786597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 24228363 - 24228434
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| |||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||    
T  24228363 aagtgaatgatcaaaccaattaaagaccaataaccatacatatattaatgagggttataggaaggtggaaga 24228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 40786866 - 40786801
Alignment:
Q  5 ataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||| |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  40786866 ataatgtgttatgaaattgattcttagcattgcaagata---ttataaagtatataagaatagagagaa 40786801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 24213370 - 24213441
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||| ||  ||||||| ||||||||||||    
T  24213370 aagtgaatgatcaaaccaattaaagaccaataaccatacatttactaatggaggttataagaaggtggaaga 24213441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 24228292 - 24228342
Alignment:
Q  77 tgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 127  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  24228292 tgtattgtattacttcacaagtgtgtactttacattacaatatagatccta 24228342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 35074208 - 35074292
Alignment:
Q  132 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagac-caagaatggacatcca 215  Q
    |||||||||| ||||||||||||||||| |||||||| |||| ||||  ||||||||||||| |||||  ||| |||||||||||    
T  35074208 aatgatcaaagcaattaaggaccactaatcatacattcactagtgagaattataggaaggtgaaagacttaaggatggacatcca 35074292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 24213294 - 24213349
Alignment:
Q  72 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 127  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  24213294 aagagtgtattgtattacttcacaagtatgtactttacattacaatataggtccta 24213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 16633354 - 16633446
Alignment:
Q  126 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    ||||| ||||||||||  |||||||| |||||||| || || |  ||| || |||||||||||||||||||||| ||| |||||||||||||||    
T  16633354 taagtgaatgatcaaagtaattaaggtccactaactattcactcgctaatg-gggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 24213214 - 24213273
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||||| | |||||||||    
T  24213214 tgttatgaaattgatccttagcattgtaaga---tattataaagtatataacattagagagaa 24213273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 32929005 - 32928939
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||| ||||||||||| ||| ||||||||||   ||| |||||| ||||||||||||||||||    
T  32929005 gataacgtgttttgaaattgatcattaacattgcaaga---tatcataaagcatataagaatagagagaa 32928939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 21575048 - 21575094
Alignment:
Q  178 gggttataggaaggtggaagaccaagaatggacatccactaacttat 224  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  21575048 gggttataggaaggtggaagactaaggatggacatccactaagttat 21575094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 17604731 - 17604690
Alignment:
Q  178 gggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  17604731 gggttataggaaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||| ||||||||||  ||||||||| |||||||||| |||| |||  || | ||||| | |||||| ||||| ||| |||||||||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 29742053 - 29742119
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||||||||||| ||||   ||||||||| ||||| |   |||||||||||||||||||||||    
T  29742053 gataacgtgttatgaaattaatccaatgcattgcaaaatattgt---aaagtatataagaatagagagaa 29742119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 19479552 - 19479614
Alignment:
Q  134 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaa 196  Q
    |||||||  ||||||||| |||||||| || || |||||| |||| |||||||||||||||||    
T  19479552 tgatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaaggtggaa 19479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 24228239 - 24228267
Alignment:
Q  45 tattataaagtatataagaatagagagaa 73  Q
    |||||||||||||||||||||||||||||    
T  24228239 tattataaagtatataagaatagagagaa 24228267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 25214564 - 25214609
Alignment:
Q  192 tggaagaccaagaatggacatccactaacttataattattcataacat 239  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||||    
T  25214564 tggaagatcaagaatggacatccactaact--ttattattcataacat 25214609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 25278714 - 25278759
Alignment:
Q  192 tggaagaccaagaatggacatccactaacttataattattcataacat 239  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||||    
T  25278714 tggaagatcaagaatggacatccactaact--ttattattcataacat 25278759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 31109011 - 31109058
Alignment:
Q  79 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 127  Q
    |||| ||||||||||||||||||| | ||||||| ||||||||||||||    
T  31109011 tattatattacttcacaagtgtgtca-ttacattgcaatatagatccta 31109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 20463207 - 20463318
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 226  Q
    |||| |||||||| | || |||||| |||||||||||||||| |||| |  || ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  20463207 aagtgaatgatcacagcatttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaacttataa 20463306  T
Q  227 ttattcataaca 238  Q
    ||||||||||||    
T  20463307 ttattcataaca 20463318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 20458842 - 20458952
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 226  Q
    |||| |||||||||| || ||||||  ||||||||| ||||| |||| || |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  20458842 aagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatg-gggttataggaaggtggaagattaaggatggacatccactaacttataa 20458940  T
Q  227 ttattcataaca 238  Q
    ||||||||||||    
T  20458941 ttattcataaca 20458952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 13639695 - 13639624
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  13639695 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaacgaaggttataggaaggtggaaga 13639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 20459180 - 20459075
Alignment:
Q  133 atgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataattattc 232  Q
    ||||||||| || |||||| ||||||||||| |||| ||||  | || ||| ||||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  20459180 atgatcaaagcatttaaggtccactaaccatgcattcactaacggggattacaggaaggtggaagactaaggatgaacagccactaacttataattattc 20459081  T
Q  233 ataaca 238  Q
    ||||||    
T  20459080 ataaca 20459075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 7642396 - 7642305
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||||||||||||||  ||||||||||||||||||||| ||| |||| || |||||||||||||||||||||  ||  |||||||||||||||    
T  7642396 aagtaaatgatcaaagtaattaaggaccactaaccataaattcactaatg-gggttataggaaggtggaagattaaagatggacatccactaa 7642305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 21587214 - 21587306
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||| |||||||||| || ||||||| |||||||||||| || |||| || |||||||||||||||||||||  |||  |||||| |||||||    
T  21587214 aagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaagattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 44122085 - 44122172
Alignment:
Q  132 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    ||||||||||   ||||||||||| ||| |||||||| |||| |   ||||||||||||||||||||  ||| |||||||||||||||    
T  44122085 aatgatcaaagtcattaaggaccattaagcatacattcactaatattggttataggaaggtggaagattaaggatggacatccactaa 44122172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 38420041 - 38419988
Alignment:
Q  17 gaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||||||||||||| ||||||||||||   ||||||||||| |||||||||||||||    
T  38420041 gaaattgatccttaacattgcaagata---ttataaagtatgtaagaatagagagaa 38419988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13639765 - 13639716
Alignment:
Q  78 gtattgtattacttcacaagtgtgttatttacattacaatatagatccta 127  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| |||||    
T  13639765 gtattgtattgtttcacaagtgtgttctttacattacaatataggtccta 13639716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 20458775 - 20458815
Alignment:
Q  81 ttgtattacttcacaagtgtgttatttacattacaatatag 121  Q
    ||||||| |||| |||||||||| |||||||||||||||||    
T  20458775 ttgtattgcttctcaagtgtgttctttacattacaatatag 20458815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 29185623 - 29185726
Alignment:
Q  133 atgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataattattc 232  Q
    |||||||||| ||||||||||||| ||||||| |||||||| || || |||||||||||||||||| ||||||||||||||||| ||||  | |||||||    
T  29185623 atgatcaaacgaattaaggaccacaaaccatatatttactaatggggattataggaaggtggaagatcaagaatggacatccaccaact--ttattattc 29185720  T
Q  233 ataaca 238  Q
    ||||||    
T  29185721 ataaca 29185726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 22274981 - 22274915
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||||||||||| ||||  ||||||||||||   |||| ||||||||||||||||||||||||    
T  22274981 gataacgtgttatgaaattaatccaaagcattgcaaga---tattgtaaagtatataagaatagagagaa 22274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 29185542 - 29185589
Alignment:
Q  73 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 120  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  29185542 agagtatattgcattacttcacaagtgtgttttttacattacaatata 29185589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 25232089 - 25232018
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  25232089 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaatgggagttataggaaggtggaaga 25232018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 25225779 - 25225713
Alignment:
Q  132 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||| |||||| ||||||||||||    
T  25225779 aatgatcaaaccaattaagaatcactaaccatacatttactaatgagagttatatgaaggtggaaga 25225713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 19912364 - 19912279
Alignment:
Q  134 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||||||| ||||||||||| |||||||||||||| | || |  |||||||||||||||||||||  |||  ||||||||||||||    
T  19912364 tgatcaaagcaattaaggactactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 45276443 - 45276354
Alignment:
Q  126 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatcca 215  Q
    ||||| |||| ||||| | |||||||||||||||||||||||| ||||    |||||||||||||||||||||  | | |||||||||||    
T  45276443 taagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggtggaagatgagggatggacatcca 45276354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 7394657 - 7394723
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||||||||||| ||||  |||||||| |||   ||||||||||||||||| |||||||||||    
T  7394657 gataacgtgttatgaaattaatccaaagcattgctaga---tattataaagtatataaaaatagagagaa 7394723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 25232164 - 25232117
Alignment:
Q  73 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 120  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  25232164 agagtgtattgtattgcttctcaagtgtgttctttacattacaatata 25232117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 25225860 - 25225814
Alignment:
Q  72 aagagtgtattgtattacttcacaagtgtgttatttacattacaata 118  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  25225860 aagagtgtattgtattgcttctcaactgtgttctttacattacaata 25225814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 19441220 - 19441291
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||| | || |||||||||||||||||||||    
T  19441220 aagtgaatgatcaaaccatttaaggaccactaaccatagatttaccaatgggggttataggaaggtggaaga 19441291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 18640580 - 18640650
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| |||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  18640580 aagtgaatgatcaaagcaattaaggaccactaaccatacattcactaatga-ggttataggaaggtggaaga 18640650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 29547846 - 29547775
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  29547846 aagtgaatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 28201725 - 28201817
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactg-agggttataggaaggtggaagaccaagaatggacatccacta 218  Q
    |||| ||| |||||| ||||||| ||| |||||||||||||| |||| || ||||||||||||||||||||||  ||| ||||||||||||||    
T  28201725 aagtgaattatcaaagcaattaaagactactaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 27417327 - 27417390
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatatta-ttataaagtatataagaatagagagaa 73  Q
    |||||||||||||||| ||||||||||||| |||||  || |||||||||||||||||||||||    
T  27417327 tgttatgaaattgatcattagcattgcaagctattacgtacaaagtatataagaatagagagaa 27417390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 29530191 - 29530120
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||  || || ||| ||||| ||||||||    
T  29530191 aagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 32808859 - 32808782
Alignment:
Q  137 tcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatcca 215  Q
    ||||| |||||||||||||||||||||| ||| |||| || |||||||||||||||||||||  ||| ||||| |||||    
T  32808859 tcaaatcaattaaggaccactaaccatatattcactaatg-gggttataggaaggtggaagattaaggatggaaatcca 32808782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 36686908 - 36686843
Alignment:
Q  5 ataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||||||||||||| ||||  |||||||||||   ||||||||||||||| |||||||||||    
T  36686908 ataacgtgttatgaaattgattcttaatattgcaagata---ttataaagtatataaaaatagagagaa 36686843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 11444112 - 11444204
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||| ||||||||||   |||||| |||| ||| |||||||| |||| | | ||||||||||||||||||||  ||| |||||||||||||||    
T  11444112 aagtgaatgatcaaagtcattaagaaccattaagcatacattcactaataatggttataggaaggtggaagattaaggatggacatccactaa 11444204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 18643285 - 18643346
Alignment:
Q  132 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtg 193  Q
    |||||||||| |||||||||||||||||||||||| | |||| || || |||||| ||||||    
T  18643285 aatgatcaaagcaattaaggaccactaaccatacagtcactaatggggattatagaaaggtg 18643346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 11444036 - 11444084
Alignment:
Q  72 aagagtgtattgtattacttcacaagtgtgttatttacattacaatata 120  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||||||    
T  11444036 aagagtatattgtattacttcacaagtgtgtaattcacattataatata 11444084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11443954 - 11444016
Alignment:
Q  8 acgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||| ||||||||||||| |||||||||| || |||||   ||||||||||||| |||||||||||    
T  11443954 acgtattatgaaattgattcttagcattgtaatatatt---ataaagtatataataatagagagaa 11444016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 18643228 - 18643263
Alignment:
Q  79 tattgtattacttcacaagtgtgttatttacattac 114  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18643228 tattgtattacttcacaagtgtgttctttacattac 18643263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 11441667 - 11441716
Alignment:
Q  72 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatag 121  Q
    |||| ||||||||||||| ||| |||||||| ||| ||||||||||||||    
T  11441667 aagaatgtattgtattacctcataagtgtgtaattcacattacaatatag 11441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 11441588 - 11441647
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||| ||||||||||  ||||||||||||||   |||||| |||||||||| |||||||||||    
T  11441588 tgttgtgaaattgatttttagcattgcaaga---tattatgaagtatataataatagagagaa 11441647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 15553026 - 15552979
Alignment:
Q  79 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 127  Q
    |||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  15553026 tattgtattacttcacaagtgtgtca-ttacattgcaatataggtccta 15552979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 11853 - 11794
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||| | ||||||    
T  11853 tgttatgaaattgatccttagcattgcaagata---ttataaagtatataagaacaaagagaa 11794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 26654533 - 26654461
Alignment:
Q  126 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| || |  || ||||||||||||||||||||    
T  26654533 taagtgaataatcaaagcaattaaggaccactaaccatacattcaccaacgatggttataggaaggtggaaga 26654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 12753598 - 12753664
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    ||||||||||||||||||| ||||  |||||||| |||   |||| ||||||||||||||||||||||||    
T  12753598 gataacgtgttatgaaattaatccagagcattgctaga---tattgtaaagtatataagaatagagagaa 12753664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28874370 - 28874334
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattat 47  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28874370 tgttatgaaattgatccttaacattgcaagatattat 28874334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 17350076 - 17350010
Alignment:
Q  4 gataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||||||||||||||||||||||   || |||||||||   |||| |||||||||||||| |||||||||    
T  17350076 gataacgtgttatgaaattgatcaaaagtattgcaaga---tattgtaaagtatataagagtagagagaa 17350010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 5350967 - 5350929
Alignment:
Q  181 ttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  5350967 ttataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 18902153 - 18902234
Alignment:
Q  135 gatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccac 216  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| ||  ||||||||||||||| ||||  ||| ||| ||||||||    
T  18902153 gatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtgaaagattaaggatgaacatccac 18902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 51700361 - 51700446
Alignment:
Q  132 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccact 217  Q
    ||||||||||  ||||||| |||  ||| |||||||| |||| |||| ||||||| ||||| |||||  ||| |||||||||||||    
T  51700361 aatgatcaaaataattaagaaccgataatcatacattcactaatgagagttatagaaaggtagaagattaaggatggacatccact 51700446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 56341873 - 56341983
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 226  Q
    |||| |||||| ||| |||||||  |||||||||||| || | |||| | | | ||||||||||||||||||| ||  ||| |||||||| || |||||     
T  56341873 aagtgaatgatgaaaacaattaaccaccactaaccatccactcactaataaagattataggaaggtggaagactaaagatgaacatccaccaaattata- 56341971  T
Q  227 ttattcataacat 239  Q
     ||||||||||||    
T  56341972 -tattcataacat 56341983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 7895185 - 7895117
Alignment:
Q  130 taaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||||| |||||  ||||||||||||||||||||| ||| |||| ||| |||| ||| || ||||||||    
T  7895185 taaatgttcaaaataattaaggaccactaaccatatattcactaatgaaggttgtagaaaagtggaaga 7895117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 12746623 - 12746715
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||| ||||||||||   ||||||||||| |||  ||||||| |||| |   ||||||||||||||||||||   || |||||||||||||||    
T  12746623 aagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 46694139 - 46694174
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattat 47  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46694139 tgttatgaaattgatccttagca-tgcaagatattat 46694174  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 7578628 - 7578536
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||| ||||||||||  |||||||||||||| ||||| |||| |||  || |  |||| |||||||||||||| ||| |||||||||||||||    
T  7578628 aagtgaatgatcaaagtaattaaggaccactgaccatccattcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 35339066 - 35339141
Alignment:
Q  144 aattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||||||||||| ||||||| |||| |||  || | |||||||||||||||||||| ||  |||||||||||||||    
T  35339066 aattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagactaatgatggacatccactaa 35339141  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 42940025 - 42939966
Alignment:
Q  11 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 73  Q
    |||||||||||| ||||  |||||||||||||||| |   |||||||||||||||||||||||    
T  42940025 tgttatgaaattaatccaaagcattgcaagatattgt---aaagtatataagaatagagagaa 42939966  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 42129599 - 42129528
Alignment:
Q  127 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 198  Q
    |||| ||||||||||  ||||||||| || |||||||| ||| |||| |  |||||||||||||||||||||    
T  42129599 aagtgaatgatcaaagaaattaaggatcattaaccatatattcactaataggggttataggaaggtggaaga 42129528  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 14719460 - 14719501
Alignment:
Q  178 gggttataggaaggtggaagaccaagaatggacatccactaa 219  Q
    |||||||||||||||||||||| ||| | |||||||||||||    
T  14719460 gggttataggaaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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