View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_high_21 (Length: 252)
Name: NF10739_high_21
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 33865638 - 33865453
Alignment:
| Q |
29 |
tggagagaaagaatggttttgtgaatggcaggcaatctttgaaagtgactgctctccgattccattcatatcacccaaacccatcctcaagtttgtgaac |
128 |
Q |
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| T |
33865638 |
tggagagcaagaatggttttgtgaatggca----atctttgaaagtggctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaag |
33865543 |
T |
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| Q |
129 |
aagcacaaacaatattactaaaatcatgtttatcttgaaacaactcaaacctttcatttttt-aaatgaaaaattatgagctagctaggtgaaa |
221 |
Q |
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| T |
33865542 |
aagc----ataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctagatgaaa |
33865453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 33855279 - 33855101
Alignment:
| Q |
29 |
tggagagaaagaatggttttgtgaatggcaggcaatctttgaaagtgactgctctccgattccattcatatcacccaaacccatcctcaagtttgtgaac |
128 |
Q |
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| T |
33855279 |
tggagagcaagaatggttttgtgaatggca----atctttgaaagtggctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaag |
33855184 |
T |
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| Q |
129 |
aagcacaaacaatattactaaaatcatgtttatcttgaaacaactcaaacctttcatttttt-aaatgaaaaattatgagctagcta |
214 |
Q |
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| T |
33855183 |
aagc----ataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagcta |
33855101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 33854352 - 33854296
Alignment:
| Q |
196 |
aaaaattatgagctagctaggtgaaaacaaaagttttctctacttcacactccactc |
252 |
Q |
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| T |
33854352 |
aaaaattatgagctagctaggtgaaaacaaaagttttctctacttcacactccactc |
33854296 |
T |
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