View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_high_33 (Length: 229)
Name: NF10739_high_33
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 27227512 - 27227292
Alignment:
| Q |
7 |
ggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattcacaacactcagcaacagaaacactgataataattaa |
106 |
Q |
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| T |
27227512 |
ggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattgacaacactcagcaacagaaacactgataataattaa |
27227413 |
T |
|
| Q |
107 |
aaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcatcagagact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27227412 |
aaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcatcagagact |
27227313 |
T |
|
| Q |
207 |
cgtcacacttcctcttgcttc |
227 |
Q |
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| ||||||||||||||||||| |
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| T |
27227312 |
catcacacttcctcttgcttc |
27227292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 753154 - 753126
Alignment:
| Q |
20 |
cataagctcaaataagtaaatccaaacaa |
48 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
753154 |
cataagctcaaataagtaaatccaaacaa |
753126 |
T |
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