View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10739_high_34 (Length: 227)

Name: NF10739_high_34

Description: NF10739

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10739_high_34

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 177; E-Value: 1e-95

Query Start/End: Original strand, 1 - 227

Target Start/End: Original strand, 40786081 - 40786306

Alignment:

Q	1	gctgggattcttagtaaacctatttaggactttaagtannnnnnnnnnnnnnatcaagaataaatatttttctatgttgttaaattaggaacactagttg	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40786081	gctgggattcttagtaaacctatttaggactt-aagtattttttatttttttatcaagaataaatatttttctatgttgttaaattaggaacactagttg	40786179	T

Q	101	ttgtgagaggatccattgtacatattttgatttggaattggaggttatgttatattcaactctcattatcatcatataaagttcatgttacatatggtga	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40786180	ttgtgagaggatccattgtacatattttgatttggaattggaggttatgttatattcaactctcattatcatcatataaagttcatgttacatatggtga	40786279	T

Q	201	aactcatcacgttaatttgtttcactc	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40786280	aactcatcacgttaatttgtttcactc	40786306	T

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Target: chr5; HSP #2

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 56 - 122

Target Start/End: Original strand, 40793882 - 40793943

Alignment:

Q	56	aagaataaatatttttctatgttgttaaattaggaacactagttgttgtgagaggatccattgtaca	122	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40793882	aagaataaataattttccatgttgttaaatttggaacactagttgt-----gaggatccattgtaca	40793943	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]