View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10739_low_10 (Length: 344)
Name: NF10739_low_10
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 42662031 - 42662346
Alignment:
| Q |
19 |
tctcttcctcgacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatcaagcattctttgaacacaatcaatatcatg |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662031 |
tctcttcctcaacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatcaagcattctttgaacacaatcaatatcatg |
42662130 |
T |
|
| Q |
119 |
gattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaaccaattcttttctccaagcttgcacaacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662131 |
gattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaaccaattcttttctccaagcttgcacaacaa |
42662230 |
T |
|
| Q |
219 |
caagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacacccttttcatttggaagcaactcaactatttctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662231 |
caagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacacccttttcatttggaagcaactcaactatttctt |
42662330 |
T |
|
| Q |
319 |
caatcagattcctttg |
334 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42662331 |
caatcagattcctttg |
42662346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University