View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_11 (Length: 343)
Name: NF10739_low_11
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 11834303 - 11833990
Alignment:
| Q |
1 |
aaggcaggaatctcaccaaatgggaactttgtagagttgttaaagagttgagaaagtacagaaaacatgacagagctcttcaggtaaatc-aatcattat |
99 |
Q |
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| T |
11834303 |
aaggcaggaatctcaccaaatgggaactttgtagagttgttaaagagttgagaaagtacagaaaacatgacagagctcttcaggtaaatccaatcattat |
11834204 |
T |
|
| Q |
100 |
aaaccttttcttcattatatgttattctatatggtaaaaagatatttaattggagtttggtgtttgtttggctcaattgaatggtgc--tgttagtggtg |
197 |
Q |
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| T |
11834203 |
aaaccttttcttcattatatgttattctatatggtaaaaagatatttaattggagtttggtgtttgtttggctcaattgaatggtgctatgttagtggtg |
11834104 |
T |
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| Q |
198 |
gaatgtgtttttgtgataggattggagtactgtgttggctgtttttgggtttgtattgcgttggttggattgcaattgtgttcattttgagttattcatg |
297 |
Q |
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| T |
11834103 |
gaatgtgtttttgtgataggattggagtactgtgttggctg--tttgggtttgtattgcgttggttggattgcaattgtgttcattttgagttattcatg |
11834006 |
T |
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| Q |
298 |
aatatgattctactac |
313 |
Q |
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| T |
11834005 |
aatatgattctactac |
11833990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1489155 - 1489242
Alignment:
| Q |
1 |
aaggcaggaatctcaccaaatgggaactttgtagagttgttaaagagttgagaaagtacagaaaacatgacagagctcttcaggtaaa |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1489155 |
aaggcaggaatctcaccaaatgggaactttgtagagttgttaaagagttgagaaagtacagaagacatgacagagctcttcaggtaaa |
1489242 |
T |
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