View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10739_low_13 (Length: 337)

Name: NF10739_low_13
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10739_low_13
NF10739_low_13
[»] chr3 (3 HSPs)
chr3 (231-319)||(47266815-47266903)
chr3 (42-131)||(47266626-47266715)
chr3 (235-319)||(47259223-47259307)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 47266815 - 47266903
Alignment:
Q  231 aggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47266815 aggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct 47266903  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 47266626 - 47266715
Alignment:
Q  42 ttaagaaaattgaaaagacaatagactaattattgtagtttctgtgatacaggaggtttaatgaaattgtctgtaagaagaaaaacgtga 131  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47266626 ttaagaaaatcgaaaagacaatagactaattattgtagtttctgtgatacaggaggtttaatgaaattgtctgtaagaagaaaaacgtga 47266715  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 47259223 - 47259307
Alignment:
Q  235 ttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct 319  Q
    |||| ||||||||||||| ||  | | ||| ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  47259223 ttcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattggattatgattgtttgagcttcttgccttct 47259307  T

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