View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_15 (Length: 316)
Name: NF10739_low_15
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_15 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 62510 - 62712
Alignment:
| Q |
21 |
atattgaaatgaaatgttatgggactacaatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctgaaacagta |
120 |
Q |
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| T |
62510 |
atattgaaatgaaatgttatgggactacgatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctgaaacagta |
62609 |
T |
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| Q |
121 |
gttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatcacacactgcataaaaattaattattgcaaggctagagaatattgttaat |
220 |
Q |
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| T |
62610 |
gttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatcacacaccgcataaaaattaattgttgcaaggctagagaatattgttaat |
62709 |
T |
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| Q |
221 |
gaa |
223 |
Q |
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||| |
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| T |
62710 |
gaa |
62712 |
T |
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Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 3414328 - 3414123
Alignment:
| Q |
18 |
aggatattgaaatgaaatgttatgggactacaatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctgaaaca |
117 |
Q |
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| T |
3414328 |
aggatattgaaatgaaatgttatgggactacgatagtgcttgctgcgagttgaacaacaacaactcaagaacctaatcatagatcatggatgctgaaaca |
3414229 |
T |
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| Q |
118 |
gtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatcacacactgcataaaaattaattattgcaaggctagagaatattgtt |
217 |
Q |
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| T |
3414228 |
gtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatcacacactgcataaaaattaattattgcaaggttagataatactgtt |
3414129 |
T |
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| Q |
218 |
aatgaa |
223 |
Q |
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|||||| |
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| T |
3414128 |
aatgaa |
3414123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 5877403 - 5877472
Alignment:
| Q |
103 |
atggatgctgaaacagtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatca |
172 |
Q |
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| T |
5877403 |
atggatgctgaaacggtagtaaggtgtatttatggtgctggaaaatttgctgctattgatgatttaatca |
5877472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 11991264 - 11991369
Alignment:
| Q |
78 |
caactcaagaacctaatcatagatcatggatgctgaaa-cagtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatcacaca |
176 |
Q |
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| T |
11991264 |
caactcaagaatctaatcatagag-atggatgctgaaatcagtagtaaggtgtgtacatggtgctgcaaaacctgatgcaactgatgaattaatcataga |
11991362 |
T |
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| Q |
177 |
ctgcata |
183 |
Q |
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||||||| |
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| T |
11991363 |
ctgcata |
11991369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 12021453 - 12021551
Alignment:
| Q |
73 |
aacaacaactcaagaacctaatcatagatcatggatgctgaaacagtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatgagttaatca |
172 |
Q |
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|||| |||||||| || ||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||| || |||||||||||| ||||||| |
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| T |
12021453 |
aacatcaactcaaaaatctaatcatagag-atggatgctgaaacaatagtaaggtgtgtacgtggtgctgcaaaacttgctgcaattgatgaattaatca |
12021551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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