View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10739_low_16 (Length: 306)
Name: NF10739_low_16
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 6798022 - 6797745
Alignment:
| Q |
14 |
agaccagtcataaatgtcggcagggggagcaggcaatggtcctgatgctgaggaacgagagtttgaatagtgcagcacagaagttgtgctgagaacagtt |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6798022 |
agaccagtcataattgtcggcagggggagcaggcaagggtcctgatgctgaggaacgagagtttgaatagtgcagcacagaagttgtgctgagaacagtt |
6797923 |
T |
|
| Q |
114 |
tgagtaaatcttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6797922 |
tgagtaaatcttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaat |
6797823 |
T |
|
| Q |
214 |
catatatgttttggagagtatgtgatccttcaacctcgactagttttagcgtatgaccctgaattttaaagttgattg |
291 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
6797822 |
catatacgttttggagagtatgtgatccttcaacctcgactagttttagtgtatgaccctgaattctaaagttgattg |
6797745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 33845321 - 33845460
Alignment:
| Q |
123 |
cttgttgaggcaacaatgtaatagtcctttggaggttgatttaaggtaactaacacagaaactgattgtccaacatgtacatcaagtgaatcatatatgt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| ||| |||||||| || || |||| | ||||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
33845321 |
cttgttgaagcaacaatgtaatagtccttaggagattggtttaaggttaccaaaacagcagctgattgcccaacatggacatcaagggagtcatatatgt |
33845420 |
T |
|
| Q |
223 |
tttggagagtatgtgatccttcaacctcgactagttttag |
262 |
Q |
| |
|
|||||| | |||||| ||||| ||||| ||||||||||| |
|
|
| T |
33845421 |
tttggataacatgtgacccttccacctcaactagttttag |
33845460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University