View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_19 (Length: 293)
Name: NF10739_low_19
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 50394121 - 50393860
Alignment:
| Q |
19 |
attacgcaaaacatttgagttgattagggaaatt-aaaaagttgtggtgttcaaatatcattgttgcttgatttttcctctttctctctccttgttttgt |
117 |
Q |
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| T |
50394121 |
attacgcaaaacatttgagttgattagggaaatttaaaaagttgtggtgttcaaatatcattgttgcttgatttttcctctttccctctccttgttttat |
50394022 |
T |
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| Q |
118 |
gccttggagagggagagtgtgggaaccacccaaagtgtaaataagatggaaatatcacaacccttgttctccattcaaacatcaatataataaatttatg |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394021 |
gccttggagagggagagtgtgggacccacccaaagtgtaaataagatggaaatatcacaacccttgttctccattcaaacatcaatataataaatttatg |
50393922 |
T |
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| Q |
218 |
ctctcccaaatcccaaagaaaatcattttcgttaaaagtgataaatatttgctgtacttgcc |
279 |
Q |
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| T |
50393921 |
cactcccaaatcccaaagaaaatcattttcgttaaaagtgataaatatttgctgtacttgcc |
50393860 |
T |
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