View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_21 (Length: 282)
Name: NF10739_low_21
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 1553800 - 1553539
Alignment:
| Q |
1 |
tagcggtatagcagatagagaatgaccgctacaagtaatcataaattccaaaaacatacataaatactcaaaaacacgtataaggtctttgagaaatccc |
100 |
Q |
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| T |
1553800 |
tagcggtatagcagatagagaatgaccgctacaagtaatcataaattccaaaaacatacataaatactcaaaaacacgtataaggtctttgagaaatccc |
1553701 |
T |
|
| Q |
101 |
cctaattaaatagcaacagcagccatcaaaacggcacagtagcaggattgtgccgcttttcaaccgctaatagaggccactattgccgctactctcaaca |
200 |
Q |
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| T |
1553700 |
cctaa----atagcaacagcagccatcaaaacggcacagtagcaggattgtgccgcttttcaaccgctaatagaggccactattgccgctactctcaaca |
1553605 |
T |
|
| Q |
201 |
gggacgggcctatagcatagtagtggagggccatatcaccatgctacaccgctatagtgcaatatt |
266 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1553604 |
gggacgggcctatagcatagtagtggagggccgtatcaccatgctacaccgctatagtgcaatatt |
1553539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1549341 - 1549305
Alignment:
| Q |
146 |
gattgtgccgcttttcaaccgctaatagaggccacta |
182 |
Q |
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| T |
1549341 |
gattgcgccgcttttcaaccgctaatagcggccacta |
1549305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 33689577 - 33689620
Alignment:
| Q |
33 |
aagtaatcataaattccaaaaacatacataaatactcaaaaaca |
76 |
Q |
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| T |
33689577 |
aagtaaacataaattccaacaacatacataaatactcaaaaaca |
33689620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 33691169 - 33691217
Alignment:
| Q |
150 |
gtgccgcttttcaaccgctaatagaggccactattgccgctactctcaa |
198 |
Q |
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||||||||||||||| |||||||| |||| || ||| |||||||||||| |
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| T |
33691169 |
gtgccgcttttcaacagctaatagcggccgctgttgacgctactctcaa |
33691217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 6394928 - 6394887
Alignment:
| Q |
33 |
aagtaatcataaattccaaaaacatacataaatactcaaaaa |
74 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| |
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| T |
6394928 |
aagtaaacataaattccaacaacatacataaatactcaaaaa |
6394887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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