View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10739_low_25 (Length: 266)
Name: NF10739_low_25
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10739_low_25 |
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| [»] scaffold0281 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28680995 - 28680747
Alignment:
| Q |
1 |
gagattcaataggaagaaa-taaggaatgagaaaacatcacaccactgaaaaacgggttgttaatcctttttcatcgaaaaaa-cctgtcatac-gatag |
97 |
Q |
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| T |
28680995 |
gagattcaagaggaagaaaataaggaatgagaaaacatcacaccactgaaaaacgggttattaatcctttttcatcgaaaaaaacctctcataccgatag |
28680896 |
T |
|
| Q |
98 |
taaatttgattaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagttt |
197 |
Q |
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| T |
28680895 |
taaatttggttaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagttt |
28680796 |
T |
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| Q |
198 |
ctttttacaaattcttatgattaccgttcttatcattatctttgcatga |
246 |
Q |
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| T |
28680795 |
ctttttacaaattcttatgattattgttcttatcattatctttgcatga |
28680747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 10037 - 10287
Alignment:
| Q |
1 |
gagattcaataggaagaaataaggaatgagaaaacatcacaccactgaaaaacgggttgttaatcctttttcatcgaaaaaa-cctgtcatac-gatagt |
98 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
10037 |
gagattcaagaggaagaaataaggattgagaaaacatcacacccctgaaaaacgggttgttaatcctttttcatcgaaaaaaacctctcataccgatagt |
10136 |
T |
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| Q |
99 |
aaatttgattaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagtttc |
198 |
Q |
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| T |
10137 |
aaatttggttaatatgattctttatcatatctgcaaaaatattatatatttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagtttc |
10236 |
T |
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| Q |
199 |
tttttacaaattcttatgattaccgttcttatcattatctttgcatgattt |
249 |
Q |
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| T |
10237 |
tttttacaaattcttatgattattgttcttaccattatctttgcatgattt |
10287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 31860554 - 31860804
Alignment:
| Q |
1 |
gagattcaataggaagaaataaggaatgagaaaacatcacaccactgaaaaacgggttgttaatcctttttcatcgaaaaaa-cctgtcatac-gatagt |
98 |
Q |
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| T |
31860554 |
gagattcaagaggaagaaataaggattgagaaaacatcacacccctgaaaaacgggctgttaatccctttttatcgaaaaaaacctctcatactgatagt |
31860653 |
T |
|
| Q |
99 |
aaatttgattaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagtttc |
198 |
Q |
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| T |
31860654 |
aaatttgattaatatgattctttatcgtatctgcaaaaatattatatctttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagtttc |
31860753 |
T |
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| Q |
199 |
tttttacaaattcttatgattaccgttcttatcattatctttgcatgattt |
249 |
Q |
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| T |
31860754 |
tttttacaaattcttatgattattgttcttaccattatctttgcatgattt |
31860804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25423596 - 25423542
Alignment:
| Q |
1 |
gagattcaataggaagaaataaggaatgagaaaacatcacaccactgaaaaacgg |
55 |
Q |
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| T |
25423596 |
gagattcaagaagaagaaataaggaaagagcgaacatcgcaccactgaaaaacgg |
25423542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 6127741 - 6127673
Alignment:
| Q |
97 |
gtaaatttgattaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaa |
165 |
Q |
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| T |
6127741 |
gtaaatttggttaatttgattctttattgtatctgcaaaaatatcatttctttgtatgaagaagggaaa |
6127673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 13220630 - 13220698
Alignment:
| Q |
97 |
gtaaatttgattaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaa |
165 |
Q |
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| T |
13220630 |
gtaaatttggttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaa |
13220698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 13107027 - 13107085
Alignment:
| Q |
107 |
ttaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaa |
165 |
Q |
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| T |
13107027 |
ttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaa |
13107085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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