View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10739_low_3 (Length: 429)

Name: NF10739_low_3
Description: NF10739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10739_low_3
NF10739_low_3
[»] chr4 (11 HSPs)
chr4 (19-429)||(5102032-5102442)
chr4 (66-427)||(5106306-5106662)
chr4 (236-387)||(2467282-2467433)
chr4 (66-224)||(2491037-2491195)
chr4 (93-211)||(2621180-2621298)
chr4 (313-383)||(2621400-2621470)
chr4 (22-130)||(2467533-2467641)
chr4 (93-222)||(2519144-2519273)
chr4 (264-376)||(2518981-2519093)
chr4 (257-376)||(2525503-2525622)
chr4 (86-140)||(2486300-2486354)
[»] chr7 (1 HSPs)
chr7 (22-322)||(2576342-2576634)
[»] chr1 (1 HSPs)
chr1 (87-191)||(15837976-15838080)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 5102032 - 5102442
Alignment:
Q  19 cagatgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5102032 cagatgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatag 5102131  T
Q  119 tcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccctctct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5102132 tcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacgtcacatcactcaacatcaccctctct 5102231  T
Q  219 tcccgagtcctcaacgtcctcaacacgcttcttatcctaatctctactttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttccta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5102232 tcccgagtcctcaacgtcctcaacacgcttcttatcctaatctctactttgactttaaacatcaaatcgctcgctctctaccaccccattaagcttccta 5102331  T
Q  319 caaaagggttgcgagcattctccctaaagatgaaaaatttgacatctatcacttgttaccgaattgcttcggaggtatatcagagtcacctcttcttctt 418  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5102332 caaaagggttgcgagcattctcccaaaagatgaaaaatttgacatctatcacttgttaccgaattgcttcggaggtataccagagtcacctcttcttctt 5102431  T
Q  419 tgctgattggt 429  Q
    |||||||||||    
T  5102432 tgctgattggt 5102442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 66 - 427
Target Start/End: Original strand, 5106306 - 5106662
Alignment:
Q  66 agtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatcc 165  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||| || |||| |||||||||||||||||||||| ||| ||||||||||||||| |    
T  5106306 agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattc 5106405  T
Q  166 ctctccttttcgaaaggttccctaacgtcacaacactca----acatcaccctctcttcccgagtcctcaacgtcctcaacacgcttcttatcctaatct 261  Q
     || ||| ||| ||||||||||| |||||||| ||||||    ||||||| ||||| ||| ||| ||||||||          ||||||   || |||||    
T  5106406 atcgcctcttcaaaaggttcccttacgtcacatcactcactcaacatcactctctcctccggagacctcaacga---------gcttctgtaccaaatct 5106496  T
Q  262 ctactttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagcattctccctaaagatgaaaaatttgac 361  Q
    || |||| |||||||| ||||||| ||||||||||||||||||||||||| |||||| ||  ||||||||||| ||||||||||||||||||||||||||    
T  5106497 ctgctttccctttaaatatcaaattgctcgctctctaccaccccattaagtttcctaaaattgggttgcgagctttctccctaaagatgaaaaatttgac 5106596  T
Q  362 atctatcacttgttaccgaattgcttcggaggtatatcagagtcacctcttcttctttgctgattg 427  Q
    |||||||||||||||||||||||||||||  ||| |  ||||| | ||||||||| ||||||||||    
T  5106597 atctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctcttcttcattgctgattg 5106662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 387
Target Start/End: Complemental strand, 2467433 - 2467282
Alignment:
Q  236 cctcaacacgcttcttatcctaatctctactttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagca 335  Q
    ||||||| | ||||||| |  |||||| ||||| |||||  || ||||||| ||| |||||||||||||||| | | ||||| || | |||||||||||     
T  2467433 cctcaacgcacttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagct 2467334  T
Q  336 ttctccctaaagatgaaaaatttgacatctatcacttgttaccgaattgctt 387  Q
    ||||||  | |||||||||||||||||||  |||||||||||||||||||||    
T  2467333 ttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgctt 2467282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 2491195 - 2491037
Alignment:
Q  66 agtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatcc 165  Q
    ||||||| |||||||||   |||||| ||||||||| |||| ||||| || ||||| ||||| |||||||||||| | |||  ||| ||||||||| |      
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  166 ctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccctctcttcccga 224  Q
     ||  || || ||||||||||||||| | ||| || |||| ||||||||||||||||||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccga 2491037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 2621180 - 2621298
Alignment:
Q  93 aaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacg 192  Q
    |||||||||||||| ||||| || ||||| || |||||  |||||||| | |||  ||||||||||||||| |||| ||| ||||| |||||||||||      
T  2621180 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 2621279  T
Q  193 tcacaacactcaacatcac 211  Q
    ||||| | |||||||||||    
T  2621280 tcacatccctcaacatcac 2621298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 2621400 - 2621470
Alignment:
Q  313 ttcctacaaaagggttgcgagcattctccctaaagatgaaaaatttgacatctatcacttgttaccgaatt 383  Q
    |||||||| | ||||||||||| ||||||  ||| |||||||||||||||||| |||||||||||||||||    
T  2621400 ttcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaatt 2621470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 2467641 - 2467533
Alignment:
Q  22 atgggatgctagcttataacctctccttcctctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgtct 121  Q
    ||||||||||||||| |||||||||     ||||||| || || ||||||||||||||||| | |||||| |||||||||||||| || || ||  ||||    
T  2467641 atgggatgctagcttctaacctctctgctgtctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtct 2467542  T
Q  122 tcgattctc 130  Q
    |||||||||    
T  2467541 tcgattctc 2467533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 2519273 - 2519144
Alignment:
Q  93 aaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacg 192  Q
    ||||||||| |||| ||||| || ||| |||||| ||| ||||||||| | |||| ||| ||||||||| | | ||  || || || |||||||| ||||    
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 2519174  T
Q  193 tcacaacactcaacatcaccctctcttccc 222  Q
    | ||| ||||||||||||| ||||||||||    
T  2519173 ttacatcactcaacatcactctctcttccc 2519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 376
Target Start/End: Complemental strand, 2519093 - 2518981
Alignment:
Q  264 actttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagcattctccctaaagatgaaaaatttgacat 363  Q
    ||||| |||||| || ||| ||||||| |||||||||| || || |  ||||||| | ||||||||| ||| || || | ||| ||||||||||||||||    
T  2519093 actttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacat 2518994  T
Q  364 ctatcacttgtta 376  Q
     | ||||||||||    
T  2518993 atctcacttgtta 2518981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 2525622 - 2525503
Alignment:
Q  257 aatctctactttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagcattctccctaaagatgaaaaat 356  Q
    |||||| ||||| |||||| || ||||||||||| ||||||||||||||   ||| |||||  ||| | |||||| |  || |||   || |||||||||    
T  2525622 aatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaaaat 2525523  T
Q  357 ttgacatctatcacttgtta 376  Q
    ||||||||| ||||||||||    
T  2525522 ttgacatctctcacttgtta 2525503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 2486354 - 2486300
Alignment:
Q  86 cgtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatc 140  Q
    |||||| ||||||||| |||| ||||| || ||||| ||||||||||||||||||    
T  2486354 cgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatc 2486300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 2576342 - 2576634
Alignment:
Q  22 atgggatgctagcttataacctctccttcctctctct--tcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatcgt 119  Q
    |||||||| ||||||||||||||||||||||||||||  || |||||||||||||| |||||  | | ||| |||||||||||| || ||||| ||||||    
T  2576342 atgggatgttagcttataacctctccttcctctctctcttcaagatagtttcaagtatctcttcgtcatcttgaaacagtttttatccatcaccaatcgt 2576441  T
Q  120 cttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttccctaacgtcacaacactcaacatcaccctctctt 219  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||   || ||| ||||||||| |||||||||||| | ||||||||| ||| ||||  |    
T  2576442 cttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaacgtca-atcactcaacaacactctctact 2576540  T
Q  220 cccgagtcctcaacgtcctcaacacgcttcttatcctaatctctactttgcctttaaacatcaaatcgctcgctctctaccaccccattaagcttcctac 319  Q
    |||||||||||||||         ||| ||||| |  |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2576541 cccgagtcctcaacg---------cgcatcttaccgaaatctctattttccctttaaacatcaaattgctcgctctctaccaccccattaagcatcctac 2576631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 15837976 - 15838080
Alignment:
Q  87 gtctcgaaacagtttttgtctatcactaatcgtcttcgattctcggtcacaatcactgatcgaaccatccctttcatccctctccttttcgaaaggttcc 186  Q
    ||||| ||||||||| | || ||||| || ||||| ||||||||  ||| |||||  |||| ||| ||||||||||| |||  ||| ||| |||||||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttcc 15838075  T
Q  187 ctaac 191  Q
    |||||    
T  15838076 ctaac 15838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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